rfc1 (rfc1,LOC106632949,LOC107562595,LOC107709469,LOC107598304)


Basic Information

Item Value
gene id rfc1
gene name rfc1,LOC106632949,LOC107562595,LOC107709469,LOC107598304
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 10937228 ~ 10961204 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943178.2
GCCCCCTTTGCGTCATCACGCTGCGCCAGAAAGAATCACTCTTGGCGCCAAAGACTGTAAGCGTATCGTTACGCACTTTtgctgcaacaacaacaaaaagttaATGACAGCTGTTGAAGATGGATATACGCAGATTCTTCGCGCCAAAGCCTGGCCACGgtggtggcagcagcagcactgacGATGAGCcgaagaataaaaagaaacccGCTTCCAAGACTACAAGCTCCAAATTGGAGGAAAAACGATCAGTCAAACGGAAGAAGAGGGTCATTGCTGATTCAGatgaggaagaagaggagaggaaaggaaagaaaagccCTAAACAGAAGCCTGCAGCATCTGGGAAGAAAGATCCTGTGACTTATGTGTCTGATTCAGACTCCGATGACGCCTTTATGTCTCTGAAAAAGTCCTCGAAACTCAAAGAGAACGGCTGCAGCAAAGGGAAGAAGGACTCGGACTCGAAGGAGACAAAATCGAAGCAGGTGAAAACGCCTCCTGTTAAATCCCCGAGCGCGAAAGGAGAAGCGAAGAAGAACGTACTCAGTCCGACTCCTCCGAAGTCGACCGCGCCCAAACACACCCCCACCTCTGCGTTTGATTACTTCGGCAACTCCACGGCCAAGAGATCCGATAAGAAGCTGGTGGCCAGTACGAGCACCAAGAGGAAAGTGCCAACACAAGACACCGAGGAAACACCCGATGATGCGGCCATCGCTAAACAGTTACAGATGGATGAGGACATGGAGttggAGAAGCAGATCCATGAAGATGAGGAGTTTGCTCGAACCCTGGCCATGTTTGACGAGGCCCCAGTGCCTAAAAAGgctCGTGTGGACTCGCGTTCACCCTCAAAGATCAGCTCTCGAGCAAACGGTGCAGAAACCAAGCCCGTGCCGAAGGAGCCTTCGCCGAAGAAGAGTCCCGTCAAAGCCAGTTCCAAACTGGCTCTGATGAAGAAGAGAGCCGACGAAGAGCAGGAACAGCGGAAGAgcgagaaggaggagaagaaaagcaAACTCGTTATCTCCCCGAAGAAAGAGCCAATAGCACAGGCTTCATCCGAGACAGCGGCCACTCCCAAATCAGGTGTTTCTCCAGGAAGCGCAAAACGCATTTCCACACCCAAGAGTGGAGGAAGCAACAAGACCTCTCCTACTAAACCAGAGATCAGTCCGGAGGACTCGGAGAAGAAGCGTATGAATTCTGCAGCGTTTCGGAACTACCTGAACCGAGAAGGACCTCGCGCTCTGGGCTCTAAAGAGATCCCGCAGggagaGGAGAACTGCCTTGagggctgtgtgtttgtgttaacgGGTGTTTTGGAGTCCATGGAGAGGGAAGATGCGAAGTCTCTAATAGAACGCTACGGTGGGAAAGTCACGGGAAACGTCAGCCGGAAAACCACGTACCTGGTGCTGGGCCGAGACAGTGGAGCCTCCAAGACTGAGAAGGCACAGGGTTTTGGCACCAAGATCATAAATGAGGATGAGTTACTGGAATTGATCCGAACCAAACCAGGCAAAAAGTCCAAATACGAGATCGCTGCAGAAGCTGAGAGTAAAGCCACTAAATCAAGGACCCCAGACTCTAAAGTCAAACGCACCCCTCCAGGACGCAAAGTCTCACCCCAAAAACCCTCTGCAAGCAAGAGCAGTCCCTCGCCGAGGAAATCGCGGCCATCTTCCTCTTCTACCCCTGGGACTTCTAGAGCTTCCCGCCAAGGCTCCTCATCCGAGGTCAGAAAGACTCTGGAATTCGGTGCAGGAAAAAGCACGCCCTCTGTGGCAGAGGACGATGGCACCAGCCTGTTGTGGGTGGATAAGTACCGCCCCCGCAGCCTGAAGAATCTGATTGGGCAGCAGGGTGAGCAGAGCTGTGCCAATAAGCTACTGAGATGGCTGAAGAGCTGGCATAAAAATCACAGCGGCAATGCCAAACCAACagCTGCTAGGTTTGGCAAGTTTGGAGGTAAGGATGATGGTTCTGggtttaaagctgctttgctcTCTGGACCTCCTGGTGTGGGGAAGACCACCACTGCTGCTCTCGTGTGTGAGgagttgGGTTACAGTTACGTGGAGATGAACGCCAGCTGCACCCGCAGCAAGAACAGTCTGAAAGAAGTAATCGCCGAGTCTCTCAATAACACAAGCATTAAGAACTTCTACACAGgtGCATCTCAGACGGTCAGCGATAAACACGTCCTCATTATGGACGAGGTGGATGGCATGGCAGGAAATGAGGACAGAGGAGGAATACagGAGATGATTGGCCTGATAAAAAATTCAAAGATCCCCATCATTTGCATGTGTAACGACCGCAACCATATGAAGATCCGCTCACTTGCTAACTACTGCTTCGACCTGCGTTTCCAGCGGCCTCGTGTGGAACAGATAAAGGGTGCCATGATGTCCATTGCTTTTAAAGAAGGTTTAAAAATCCCGCCTCCGGCCCTCAACGAAGTCATTCTGGCGTCAAATCAGGACATTCGACAGGTGCTGCATAATTTGAGTATGTGGTCAGCCACAGACAAGGTCATGACCTACGACCAGGCAAAAGCAGACGCTAACAAGGCCAAGAAGGACATGAAAATGGGACCATTTGACGTGTGCAGGAAAGTGTTTCTTTCAGGCGAAGAGACCGCCCACATGACACTGATTGACAAGTCCGATCTTTTCTTTCACGATTACTCACTGGCACCGCTGTTCGTCCAAGAGAACTACGTACATGTGCGGCCAGCTGCCGCAGGGGGAAATCTGAAGAACCATTTAGTGCTGCTGAGTAAAACGGCAGACAGTATCTGTGATGGAGATTTAGTGGATAGACAGATCCGCTCTCGCCAGACCTGGTCTCTGCTACCCACGCAGGCAATCTATGCCAGTGTGCTGCCTGGGGAATTGATGCGTGGTTATATGAGTCAGTTTCCCACATTTCCCAGCTGGCTGGGGAAGTTCTCATCCACGGGCAAACACAGTCGCATTGTACAGGAGCTGTCCTCACACATGAGTCTGAAGACGCTGAGCAGTAAGCAGGCAGTAAATCTAGACTACCTGCCCTACCTGCGTCCTGCCCTGCTGGAGCCTCTGCAGTGTCGTGGGGCAGATGGAGCCAGTGAGAGCGTGAAGCTCATGGATGACTACGACCTCATCAAAGAGGATTTTGACAGCATCATGGAGATCAGTACATGGGGTGGACAACCTGATCCGTACTCCAAGCTTGACCCCAAGGTGAAAGCTGCATTCACACGGGCTTATAACAAGGAGTCGCACTTGACACCGTACTCACTGCAGGCAGTAAAGAAAGGTCGCAGAGGAGCAGTTGACGCTGATCTGGCTTTAGACCCCGACAATGACCTCCAgggacaggaagaggaggaggaggaaactCTTAATACGGATGCCATGATCAAGCAAAAGAAGGCTAAACCTACAAAAGAGGTCAAGCAGGAGAAAGCAGGGGATTCTGGAAAGGGCAAAGGCAAAGGAAAAGGCAAGAAGTGAAATGAGGCCTGCACTGAGAAGAGCCGTACAGGAAGGCATATTGTAAACAAGTGCTTGGTCCTCCTCTCTGTTAAGAACTCTGATGGCAGGCGGCAAAGATCAGACCTTCCTAAGGCTATCGAAAGGTCAGTATTAACAAGGAGTGAGGGGTGGAAAGAGGAGGCATTTTCAGCAATTAAAAGCGAGTGGGCGGCCATTCCATCTTCTTGCACTTGACTGGATGAAACGGACGATAGAAACAGggagcacattcacacacagcactcatttacatacacacagtaaaacttAAAACCATCTATGACATCAAACATCTCTCATCTCAGCCCTTACTCTCATTACACCTACTATTTCTTATTCACTTGCAGCTCTTATAAGGTTACATAAGCACTTTGCATAAATCACATACTGCTCTTGAAGGCTTCCTGAAGATGATGCACATTCAGAACGCATTTGAACCGTGAGCTGTAAATATATATGCGCAGTTGAACTCTATAATTTGAACTCGTATATAATTTGATATTTAGTCAATTTGAAGATTGTGGGAAAgaactttgtttttgtgttggCTTTTTTCTATGGAAATTTTTCTTACAAACTGACAGTGTGATCTACTGGCCTGTAGTATAGACTGTATATGACTTTGGATTTTCAACAAGCAATTAAAGAATGAGTAACGTGAGA

Function

symbol description
rfc1 Predicted to enable ATP binding activity; DNA binding activity; and DNA clamp loader activity. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be located in nucleus. Predicted to be part of DNA replication factor C complex. Human ortholog(s) of this gene implicated in West Nile fever. Orthologous to human RFC1 (replication factor C subunit 1).

NR:

description
PREDICTED: replication factor C subunit 1

GO: NA

KEGG:

id description
K10754 RFC1; replication factor C subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943178.2 True 4190 mRNA 0.49 24 10937228 10961204

Neighbor

gene id symbol gene type direction distance location
rpl9 rpl9,LOC107700291,LOC107671920,LOC107709470 coding upstream 1967 10930341 ~ 10935261 (+)
ugdh ugdh,LOC107757604 coding upstream 21015 10906335 ~ 10916213 (+)
pds5a pds5a,LOC107757607 coding upstream 64665 10839185 ~ 10872563 (+)
gpr75 gpr75,LOC107602942,LOC107683917,LOC107739897,LOC107553188,LOC107654975 coding upstream 187671 10746707 ~ 10749557 (+)
haspin gsg2,LOC108416162 coding upstream 601166 10308993 ~ 10336062 (+)
adgrl3.1 adgrl3.1,LOC108260566,LOC108437730,LOC107702411 coding downstream 77763 11038967 ~ 11216849 (+)
qdprb1 dhpr,qdpr,qdprb1,LOC108437732,LOC107750446,LOC107702409,LOC107562607 coding downstream 309322 11270526 ~ 11292889 (+)
ldb2b ldb2b,LOC108260957,LOC108434309,LOC107548319,LOC107750444,LOC107671914,LOC107562611 coding downstream 339574 11300778 ~ 11322564 (+)
tapt1b tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 coding downstream 369725 11330929 ~ 11347575 (+)
fgfbp2b NA coding downstream 447996 11409200 ~ 11411027 (+)
LOC113544427 NA non-coding upstream 59335 10876855 ~ 10877893 (+)
G395437 NA non-coding upstream 125506 10810534 ~ 10811722 (+)
G395429 NA non-coding upstream 155379 10781606 ~ 10781849 (+)
G395423 NA non-coding upstream 169105 10767606 ~ 10768123 (+)
G395420 NA non-coding upstream 186920 10749977 ~ 10750308 (+)
G395474 NA non-coding downstream 14212 10975416 ~ 10975628 (+)
G395568 NA non-coding downstream 258650 11219854 ~ 11220065 (+)
G395818 NA non-coding downstream 449928 11411132 ~ 11412521 (+)
G395838 NA non-coding downstream 482441 11443645 ~ 11443866 (+)
G395863 rbm47 non-coding downstream 695386 11656590 ~ 11660349 (+)
smim14 smim14,LOC107700293,LOC107757606 other upstream 31814 10897933 ~ 10905414 (+)
G395365 NA other upstream 275525 10660946 ~ 10661703 (+)
G395242 NA other upstream 420859 10506590 ~ 10516369 (+)
LOC113544300 NA other upstream 698029 10199323 ~ 10239199 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other upstream 820304 10100937 ~ 10116924 (+)
smim18 smim18 other downstream 300294 11261498 ~ 11265170 (+)
prom1b prom1,LOC108434342 other downstream 390982 11352186 ~ 11403274 (+)
ptpn9b LOC108260905,LOC108434348,LOC107656769 other downstream 567349 11528553 ~ 11552542 (+)
G396005 NA other downstream 1135767 12096971 ~ 12102765 (+)
LOC113547319 NA other downstream 2194072 13155276 ~ 13160354 (+)

Expression


Co-expression Network