LOC113544427


Basic Information

Item Value
gene id LOC113544427
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 10876855 ~ 10877893 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404505.2
GTGAGAGCAAAACTGTGCGCAGAGTCATCGCTGCAGCCCTGCAGAGAGTGAAGAGGTCGAGATGAAGCGAGGGCCAAATCCCACTgacaccactatcagcagGTAAATAAAGTCAAGAGAAAAGCAACATGAacaacatcagcaacatcacAGAAGCATTTCGTTTCAACTTTAGAGTTTCAACTGAAGTTATGATGGAAATGAGAAGTGACAGTGGAGCGCATATCTGCAAGGGAAGTGACCAATCGGAAATCTGAAGCCCCgaaaatatgattcattttcataattttgcaacATGATCTTAGAAGCtttgttatacagtatgtccttactaaacactttattatttgttaaagGTTTGAGTCAGCAAAAAATCCAGTTCTTGTACattctttgtacattttgttcttaTACATTCAAGtttcattaactaatgttaacaagtacaaggaaaaaatgtca

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404505.2 True 462 lncRNA 0.38 3 10876855 10877893

Neighbor

gene id symbol gene type direction distance location
pds5a pds5a,LOC107757607 coding upstream 4292 10839185 ~ 10872563 (+)
gpr75 gpr75,LOC107602942,LOC107683917,LOC107739897,LOC107553188,LOC107654975 coding upstream 127298 10746707 ~ 10749557 (+)
haspin gsg2,LOC108416162 coding upstream 540793 10308993 ~ 10336062 (+)
LOC113544364 col19a1 coding upstream 1002681 9613328 ~ 9874174 (+)
adgrb3 adgrb3,LOC107665593,LOC107747274,LOC107736840 coding upstream 1416750 9254662 ~ 9460105 (+)
ugdh ugdh,LOC107757604 coding downstream 28442 10906335 ~ 10916213 (+)
rpl9 rpl9,LOC107700291,LOC107671920,LOC107709470 coding downstream 52448 10930341 ~ 10935261 (+)
rfc1 rfc1,LOC106632949,LOC107562595,LOC107709469,LOC107598304 coding downstream 59335 10937228 ~ 10961204 (+)
adgrl3.1 adgrl3.1,LOC108260566,LOC108437730,LOC107702411 coding downstream 161074 11038967 ~ 11216849 (+)
qdprb1 dhpr,qdpr,qdprb1,LOC108437732,LOC107750446,LOC107702409,LOC107562607 coding downstream 392633 11270526 ~ 11292889 (+)
G395437 NA non-coding upstream 65133 10810534 ~ 10811722 (+)
G395429 NA non-coding upstream 95006 10781606 ~ 10781849 (+)
G395423 NA non-coding upstream 108732 10767606 ~ 10768123 (+)
G395420 NA non-coding upstream 126547 10749977 ~ 10750308 (+)
G395313 NA non-coding upstream 290690 10585950 ~ 10586165 (+)
G395474 NA non-coding downstream 97523 10975416 ~ 10975628 (+)
G395568 NA non-coding downstream 341961 11219854 ~ 11220065 (+)
G395818 NA non-coding downstream 533239 11411132 ~ 11412521 (+)
G395838 NA non-coding downstream 565752 11443645 ~ 11443866 (+)
G395863 rbm47 non-coding downstream 778697 11656590 ~ 11660349 (+)
G395365 NA other upstream 215152 10660946 ~ 10661703 (+)
G395242 NA other upstream 360486 10506590 ~ 10516369 (+)
LOC113544300 NA other upstream 637656 10199323 ~ 10239199 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other upstream 759931 10100937 ~ 10116924 (+)
fam135a fam135a other upstream 826754 9947741 ~ 10050101 (+)
smim14 smim14,LOC107700293,LOC107757606 other downstream 20040 10897933 ~ 10905414 (+)
smim18 smim18 other downstream 383605 11261498 ~ 11265170 (+)
prom1b prom1,LOC108434342 other downstream 474293 11352186 ~ 11403274 (+)
ptpn9b LOC108260905,LOC108434348,LOC107656769 other downstream 650660 11528553 ~ 11552542 (+)
G396005 NA other downstream 1219078 12096971 ~ 12102765 (+)

Expression


Co-expression Network