G395313


Basic Information

Item Value
gene id G395313
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 10585950 ~ 10586165 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU468673
GCCTTCAAGTGTCCAACCTAAGGGTTATAGTGTAATATAGAGAAGCTGCATAATATTGTCCTTTTGTAAAATTGACATGTTGGGGCAACACTGTCAACCTTGTAGAAAATATCATAAGATAAGGAGATAATTTATCAGTTAATAATATTGGAACttaggtaaaaaaaattaaaaaaaaatccattacatGTTGTTTACAAATAGGTTAAATGTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU468673 True 216 lncRNA 0.30 1 10585950 10586165

Neighbor

gene id symbol gene type direction distance location
haspin gsg2,LOC108416162 coding upstream 249888 10308993 ~ 10336062 (+)
LOC113544364 col19a1 coding upstream 711776 9613328 ~ 9874174 (+)
adgrb3 adgrb3,LOC107665593,LOC107747274,LOC107736840 coding upstream 1125845 9254662 ~ 9460105 (+)
phf3 phf3 coding upstream 1827574 8745817 ~ 8758376 (+)
trnal-cag_18 NA coding upstream 1889671 8696197 ~ 8696279 (+)
gpr75 gpr75,LOC107602942,LOC107683917,LOC107739897,LOC107553188,LOC107654975 coding downstream 160542 10746707 ~ 10749557 (+)
pds5a pds5a,LOC107757607 coding downstream 253020 10839185 ~ 10872563 (+)
ugdh ugdh,LOC107757604 coding downstream 320170 10906335 ~ 10916213 (+)
rpl9 rpl9,LOC107700291,LOC107671920,LOC107709470 coding downstream 344176 10930341 ~ 10935261 (+)
rfc1 rfc1,LOC106632949,LOC107562595,LOC107709469,LOC107598304 coding downstream 351063 10937228 ~ 10961204 (+)
G395253 NA non-coding upstream 21687 10556784 ~ 10564263 (+)
G395248 NA non-coding upstream 39914 10545535 ~ 10546036 (+)
G395235 NA non-coding upstream 114380 10471360 ~ 10471570 (+)
G395234 NA non-coding upstream 114947 10470769 ~ 10471003 (+)
G395233 NA non-coding upstream 115335 10470401 ~ 10470615 (+)
G395420 NA non-coding downstream 163812 10749977 ~ 10750308 (+)
G395423 NA non-coding downstream 181441 10767606 ~ 10768123 (+)
G395429 NA non-coding downstream 195441 10781606 ~ 10781849 (+)
G395437 NA non-coding downstream 224369 10810534 ~ 10811722 (+)
LOC113544427 NA non-coding downstream 290690 10876855 ~ 10877893 (+)
G395242 NA other upstream 69581 10506590 ~ 10516369 (+)
LOC113544300 NA other upstream 346751 10199323 ~ 10239199 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other upstream 469026 10100937 ~ 10116924 (+)
fam135a fam135a other upstream 535849 9947741 ~ 10050101 (+)
LOC113544250 NA other upstream 1445652 9135957 ~ 9140298 (+)
G395365 NA other downstream 74781 10660946 ~ 10661703 (+)
smim14 smim14,LOC107700293,LOC107757606 other downstream 311768 10897933 ~ 10905414 (+)
smim18 smim18 other downstream 675333 11261498 ~ 11265170 (+)
prom1b prom1,LOC108434342 other downstream 766021 11352186 ~ 11403274 (+)
ptpn9b LOC108260905,LOC108434348,LOC107656769 other downstream 942388 11528553 ~ 11552542 (+)

Expression


Co-expression Network