G395233


Basic Information

Item Value
gene id G395233
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 10470401 ~ 10470615 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU468574
ctaaactgtatactatatggtcaaaaagtgaaATTGTGTAACCAcgaaagttcattatagtttacacatgaagtctattttgatGAAATTATGAAGAGTTCACTGATGGACACTTGAGTGCAAGTCCTACTGCAGTCCTAAAGCTTTCAAAGCAATTGCAGacctaagccatcgtagcaaaactgttcatatcaattgaagtccaaagccttctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU468574 True 215 lncRNA 0.36 1 10470401 10470615

Neighbor

gene id symbol gene type direction distance location
haspin gsg2,LOC108416162 coding upstream 134339 10308993 ~ 10336062 (+)
LOC113544364 col19a1 coding upstream 596227 9613328 ~ 9874174 (+)
adgrb3 adgrb3,LOC107665593,LOC107747274,LOC107736840 coding upstream 1010296 9254662 ~ 9460105 (+)
phf3 phf3 coding upstream 1712025 8745817 ~ 8758376 (+)
trnal-cag_18 NA coding upstream 1774122 8696197 ~ 8696279 (+)
gpr75 gpr75,LOC107602942,LOC107683917,LOC107739897,LOC107553188,LOC107654975 coding downstream 276092 10746707 ~ 10749557 (+)
pds5a pds5a,LOC107757607 coding downstream 368570 10839185 ~ 10872563 (+)
ugdh ugdh,LOC107757604 coding downstream 435720 10906335 ~ 10916213 (+)
rpl9 rpl9,LOC107700291,LOC107671920,LOC107709470 coding downstream 459726 10930341 ~ 10935261 (+)
rfc1 rfc1,LOC106632949,LOC107562595,LOC107709469,LOC107598304 coding downstream 466613 10937228 ~ 10961204 (+)
G395208 NA non-coding upstream 90963 10370822 ~ 10379438 (+)
G395209 fam184b non-coding upstream 104022 10365761 ~ 10366379 (+)
G395154 NA non-coding upstream 205383 10264326 ~ 10265018 (+)
G395147 NA non-coding upstream 233647 10236543 ~ 10236754 (+)
G394813 NA non-coding upstream 650051 9819020 ~ 9820350 (+)
G395234 NA non-coding downstream 154 10470769 ~ 10471003 (+)
G395235 NA non-coding downstream 745 10471360 ~ 10471570 (+)
G395248 NA non-coding downstream 74920 10545535 ~ 10546036 (+)
G395253 NA non-coding downstream 86169 10556784 ~ 10564263 (+)
G395313 NA non-coding downstream 115335 10585950 ~ 10586165 (+)
LOC113544300 NA other upstream 231202 10199323 ~ 10239199 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other upstream 353477 10100937 ~ 10116924 (+)
fam135a fam135a other upstream 420300 9947741 ~ 10050101 (+)
LOC113544250 NA other upstream 1330103 9135957 ~ 9140298 (+)
G394251 NA other upstream 2211099 8258928 ~ 8259302 (+)
G395242 NA other downstream 35975 10506590 ~ 10516369 (+)
G395365 NA other downstream 190331 10660946 ~ 10661703 (+)
smim14 smim14,LOC107700293,LOC107757606 other downstream 427318 10897933 ~ 10905414 (+)
smim18 smim18 other downstream 790883 11261498 ~ 11265170 (+)
prom1b prom1,LOC108434342 other downstream 881571 11352186 ~ 11403274 (+)

Expression


Co-expression Network