G395437


Basic Information

Item Value
gene id G395437
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 10810534 ~ 10811722 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU468807
caaaatataaaattagaCTTATAATAAAACCACAACTGCTGCAAAGTAGTGTTTAACAAGACCACATTCATAAAACATCCAAAAACTTCAACTTTGTTTTTCACAACAACGTGTGTTTTTCTCAGCACATATCAGGCAGCTTTAGAGAGGTGATCTGCAATCAGCTTCTGTTTGTCAGTATACTTGTGTTCAAGTTCGctgtccaatcagattccaCTAAATTATCTCTTTGAGGAaatatttaatgtcttttaacaggaaaaaaatatgtgaagAACTAAAACTGGCACTAAACAACACTGCATTAAGATTACACACTAAAATTAGTATGATAGAAGGTGTCAGTttgactaaaataaaaatacgcTTGCACGACGcatcgcaaaaaaaaaaatccaatcctTCTAAAGTGTGAACTCTAGAAAAGACttcaataaaatttaaatcaaGCAGCTTGATTTTACAGACTTGGTCCACAAGTATTTGACTGATATTAAACAACTATGATATTACTCTGTTTGGTTTAAACAGGAAAAGTAAAATTTGTCATGACAGGCTTGTCTTATTGTTCAAAATAAGTGACTTACAAAAGCATCACTAAAAAAGTATTACCTGCTTAATACCAGTAACCACTGGACAGATAATTATTGCTCAAAGAGGGCATTAACATTAATTCACTgatcaaatcaaatatgtatTCAAAGCTTACGCACATTTTCTACACAGATATAAGAAccaatcttgttttttttacaatatttacaatattttgtaAACTGTAAACGAAGAGTTTACAGTAcgatatatacatacatgacagagcaagagagagagagacagacagacagacagacaggtgaagagaaagagagagagagagagagagagagagagagagagaaagagcaagagagagtgaCAAAGAGAGTTAGACAGTgcaacaaaagaaaatgtacgAAAATAAGGTcaagtgtgagagacagagagagaaagaaaaaaagtatatgcagtatttaaatgtgcaggaagaaagaaagctcCTGTCATTTCATAGCAGCAGCTAATAATCAGCACAATGCAACAGGACGATCACCAAACCCAGTTTAGGCTCTGTATacctgagagaaagacagaagatcAGTGAATGAGATTCTATTTCAGACTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU468807 True 1167 lncRNA 0.34 2 10810534 10811722

Neighbor

gene id symbol gene type direction distance location
gpr75 gpr75,LOC107602942,LOC107683917,LOC107739897,LOC107553188,LOC107654975 coding upstream 60977 10746707 ~ 10749557 (+)
haspin gsg2,LOC108416162 coding upstream 474472 10308993 ~ 10336062 (+)
LOC113544364 col19a1 coding upstream 936360 9613328 ~ 9874174 (+)
adgrb3 adgrb3,LOC107665593,LOC107747274,LOC107736840 coding upstream 1350429 9254662 ~ 9460105 (+)
phf3 phf3 coding upstream 2052158 8745817 ~ 8758376 (+)
pds5a pds5a,LOC107757607 coding downstream 27463 10839185 ~ 10872563 (+)
ugdh ugdh,LOC107757604 coding downstream 94613 10906335 ~ 10916213 (+)
rpl9 rpl9,LOC107700291,LOC107671920,LOC107709470 coding downstream 118619 10930341 ~ 10935261 (+)
rfc1 rfc1,LOC106632949,LOC107562595,LOC107709469,LOC107598304 coding downstream 125506 10937228 ~ 10961204 (+)
adgrl3.1 adgrl3.1,LOC108260566,LOC108437730,LOC107702411 coding downstream 227245 11038967 ~ 11216849 (+)
G395429 NA non-coding upstream 28685 10781606 ~ 10781849 (+)
G395423 NA non-coding upstream 42411 10767606 ~ 10768123 (+)
G395420 NA non-coding upstream 60226 10749977 ~ 10750308 (+)
G395313 NA non-coding upstream 224369 10585950 ~ 10586165 (+)
G395253 NA non-coding upstream 246271 10556784 ~ 10564263 (+)
LOC113544427 NA non-coding downstream 65133 10876855 ~ 10877893 (+)
G395474 NA non-coding downstream 163694 10975416 ~ 10975628 (+)
G395568 NA non-coding downstream 408132 11219854 ~ 11220065 (+)
G395818 NA non-coding downstream 599410 11411132 ~ 11412521 (+)
G395838 NA non-coding downstream 631923 11443645 ~ 11443866 (+)
G395365 NA other upstream 148831 10660946 ~ 10661703 (+)
G395242 NA other upstream 294165 10506590 ~ 10516369 (+)
LOC113544300 NA other upstream 571335 10199323 ~ 10239199 (+)
agpat4 agpat4,LOC107739871,LOC107553196 other upstream 693610 10100937 ~ 10116924 (+)
fam135a fam135a other upstream 760433 9947741 ~ 10050101 (+)
smim14 smim14,LOC107700293,LOC107757606 other downstream 86211 10897933 ~ 10905414 (+)
smim18 smim18 other downstream 449776 11261498 ~ 11265170 (+)
prom1b prom1,LOC108434342 other downstream 540464 11352186 ~ 11403274 (+)
ptpn9b LOC108260905,LOC108434348,LOC107656769 other downstream 716831 11528553 ~ 11552542 (+)
G396005 NA other downstream 1285249 12096971 ~ 12102765 (+)

Expression


Co-expression Network