RNA id: XM_026943178.2


Basic Information

Item Value
RNA id XM_026943178.2
length 4190
RNA type mRNA
GC content 0.49
exon number 24
gene id rfc1
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 10937228 ~ 10961204 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCCCCTTTGCGTCATCACGCTGCGCCAGAAAGAATCACTCTTGGCGCCAAAGACTGTAAGCGTATCGTTACGCACTTTtgctgcaacaacaacaaaaagttaATGACAGCTGTTGAAGATGGATATACGCAGATTCTTCGCGCCAAAGCCTGGCCACGgtggtggcagcagcagcactgacGATGAGCcgaagaataaaaagaaacccGCTTCCAAGACTACAAGCTCCAAATTGGAGGAAAAACGATCAGTCAAACGGAAGAAGAGGGTCATTGCTGATTCAGatgaggaagaagaggagaggaaaggaaagaaaagccCTAAACAGAAGCCTGCAGCATCTGGGAAGAAAGATCCTGTGACTTATGTGTCTGATTCAGACTCCGATGACGCCTTTATGTCTCTGAAAAAGTCCTCGAAACTCAAAGAGAACGGCTGCAGCAAAGGGAAGAAGGACTCGGACTCGAAGGAGACAAAATCGAAGCAGGTGAAAACGCCTCCTGTTAAATCCCCGAGCGCGAAAGGAGAAGCGAAGAAGAACGTACTCAGTCCGACTCCTCCGAAGTCGACCGCGCCCAAACACACCCCCACCTCTGCGTTTGATTACTTCGGCAACTCCACGGCCAAGAGATCCGATAAGAAGCTGGTGGCCAGTACGAGCACCAAGAGGAAAGTGCCAACACAAGACACCGAGGAAACACCCGATGATGCGGCCATCGCTAAACAGTTACAGATGGATGAGGACATGGAGttggAGAAGCAGATCCATGAAGATGAGGAGTTTGCTCGAACCCTGGCCATGTTTGACGAGGCCCCAGTGCCTAAAAAGgctCGTGTGGACTCGCGTTCACCCTCAAAGATCAGCTCTCGAGCAAACGGTGCAGAAACCAAGCCCGTGCCGAAGGAGCCTTCGCCGAAGAAGAGTCCCGTCAAAGCCAGTTCCAAACTGGCTCTGATGAAGAAGAGAGCCGACGAAGAGCAGGAACAGCGGAAGAgcgagaaggaggagaagaaaagcaAACTCGTTATCTCCCCGAAGAAAGAGCCAATAGCACAGGCTTCATCCGAGACAGCGGCCACTCCCAAATCAGGTGTTTCTCCAGGAAGCGCAAAACGCATTTCCACACCCAAGAGTGGAGGAAGCAACAAGACCTCTCCTACTAAACCAGAGATCAGTCCGGAGGACTCGGAGAAGAAGCGTATGAATTCTGCAGCGTTTCGGAACTACCTGAACCGAGAAGGACCTCGCGCTCTGGGCTCTAAAGAGATCCCGCAGggagaGGAGAACTGCCTTGagggctgtgtgtttgtgttaacgGGTGTTTTGGAGTCCATGGAGAGGGAAGATGCGAAGTCTCTAATAGAACGCTACGGTGGGAAAGTCACGGGAAACGTCAGCCGGAAAACCACGTACCTGGTGCTGGGCCGAGACAGTGGAGCCTCCAAGACTGAGAAGGCACAGGGTTTTGGCACCAAGATCATAAATGAGGATGAGTTACTGGAATTGATCCGAACCAAACCAGGCAAAAAGTCCAAATACGAGATCGCTGCAGAAGCTGAGAGTAAAGCCACTAAATCAAGGACCCCAGACTCTAAAGTCAAACGCACCCCTCCAGGACGCAAAGTCTCACCCCAAAAACCCTCTGCAAGCAAGAGCAGTCCCTCGCCGAGGAAATCGCGGCCATCTTCCTCTTCTACCCCTGGGACTTCTAGAGCTTCCCGCCAAGGCTCCTCATCCGAGGTCAGAAAGACTCTGGAATTCGGTGCAGGAAAAAGCACGCCCTCTGTGGCAGAGGACGATGGCACCAGCCTGTTGTGGGTGGATAAGTACCGCCCCCGCAGCCTGAAGAATCTGATTGGGCAGCAGGGTGAGCAGAGCTGTGCCAATAAGCTACTGAGATGGCTGAAGAGCTGGCATAAAAATCACAGCGGCAATGCCAAACCAACagCTGCTAGGTTTGGCAAGTTTGGAGGTAAGGATGATGGTTCTGggtttaaagctgctttgctcTCTGGACCTCCTGGTGTGGGGAAGACCACCACTGCTGCTCTCGTGTGTGAGgagttgGGTTACAGTTACGTGGAGATGAACGCCAGCTGCACCCGCAGCAAGAACAGTCTGAAAGAAGTAATCGCCGAGTCTCTCAATAACACAAGCATTAAGAACTTCTACACAGgtGCATCTCAGACGGTCAGCGATAAACACGTCCTCATTATGGACGAGGTGGATGGCATGGCAGGAAATGAGGACAGAGGAGGAATACagGAGATGATTGGCCTGATAAAAAATTCAAAGATCCCCATCATTTGCATGTGTAACGACCGCAACCATATGAAGATCCGCTCACTTGCTAACTACTGCTTCGACCTGCGTTTCCAGCGGCCTCGTGTGGAACAGATAAAGGGTGCCATGATGTCCATTGCTTTTAAAGAAGGTTTAAAAATCCCGCCTCCGGCCCTCAACGAAGTCATTCTGGCGTCAAATCAGGACATTCGACAGGTGCTGCATAATTTGAGTATGTGGTCAGCCACAGACAAGGTCATGACCTACGACCAGGCAAAAGCAGACGCTAACAAGGCCAAGAAGGACATGAAAATGGGACCATTTGACGTGTGCAGGAAAGTGTTTCTTTCAGGCGAAGAGACCGCCCACATGACACTGATTGACAAGTCCGATCTTTTCTTTCACGATTACTCACTGGCACCGCTGTTCGTCCAAGAGAACTACGTACATGTGCGGCCAGCTGCCGCAGGGGGAAATCTGAAGAACCATTTAGTGCTGCTGAGTAAAACGGCAGACAGTATCTGTGATGGAGATTTAGTGGATAGACAGATCCGCTCTCGCCAGACCTGGTCTCTGCTACCCACGCAGGCAATCTATGCCAGTGTGCTGCCTGGGGAATTGATGCGTGGTTATATGAGTCAGTTTCCCACATTTCCCAGCTGGCTGGGGAAGTTCTCATCCACGGGCAAACACAGTCGCATTGTACAGGAGCTGTCCTCACACATGAGTCTGAAGACGCTGAGCAGTAAGCAGGCAGTAAATCTAGACTACCTGCCCTACCTGCGTCCTGCCCTGCTGGAGCCTCTGCAGTGTCGTGGGGCAGATGGAGCCAGTGAGAGCGTGAAGCTCATGGATGACTACGACCTCATCAAAGAGGATTTTGACAGCATCATGGAGATCAGTACATGGGGTGGACAACCTGATCCGTACTCCAAGCTTGACCCCAAGGTGAAAGCTGCATTCACACGGGCTTATAACAAGGAGTCGCACTTGACACCGTACTCACTGCAGGCAGTAAAGAAAGGTCGCAGAGGAGCAGTTGACGCTGATCTGGCTTTAGACCCCGACAATGACCTCCAgggacaggaagaggaggaggaggaaactCTTAATACGGATGCCATGATCAAGCAAAAGAAGGCTAAACCTACAAAAGAGGTCAAGCAGGAGAAAGCAGGGGATTCTGGAAAGGGCAAAGGCAAAGGAAAAGGCAAGAAGTGAAATGAGGCCTGCACTGAGAAGAGCCGTACAGGAAGGCATATTGTAAACAAGTGCTTGGTCCTCCTCTCTGTTAAGAACTCTGATGGCAGGCGGCAAAGATCAGACCTTCCTAAGGCTATCGAAAGGTCAGTATTAACAAGGAGTGAGGGGTGGAAAGAGGAGGCATTTTCAGCAATTAAAAGCGAGTGGGCGGCCATTCCATCTTCTTGCACTTGACTGGATGAAACGGACGATAGAAACAGggagcacattcacacacagcactcatttacatacacacagtaaaacttAAAACCATCTATGACATCAAACATCTCTCATCTCAGCCCTTACTCTCATTACACCTACTATTTCTTATTCACTTGCAGCTCTTATAAGGTTACATAAGCACTTTGCATAAATCACATACTGCTCTTGAAGGCTTCCTGAAGATGATGCACATTCAGAACGCATTTGAACCGTGAGCTGTAAATATATATGCGCAGTTGAACTCTATAATTTGAACTCGTATATAATTTGATATTTAGTCAATTTGAAGATTGTGGGAAAgaactttgtttttgtgttggCTTTTTTCTATGGAAATTTTTCTTACAAACTGACAGTGTGATCTACTGGCCTGTAGTATAGACTGTATATGACTTTGGATTTTCAACAAGCAATTAAAGAATGAGTAACGTGAGA

Function

GO: NA

KEGG:

id description
K10754 RFC1; replication factor C subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404505.2 lncRNA upstream 59335 10876855 ~ 10877893 (+) True LOC113544427
TU468807 lncRNA upstream 125506 10810534 ~ 10811722 (+) True G395437
TU468799 lncRNA upstream 155379 10781606 ~ 10781849 (+) True G395429
TU468793 lncRNA upstream 169105 10767606 ~ 10768123 (+) True G395423
TU468790 lncRNA upstream 186920 10749977 ~ 10750308 (+) True G395420
TU468850 lncRNA downstream 14212 10975416 ~ 10975628 (+) True G395474
TU468965 lncRNA downstream 258650 11219854 ~ 11220065 (+) True G395568
TU468936 lncRNA downstream 300321 11261525 ~ 11265169 (+) False smim18
TU469224 lncRNA downstream 449928 11411132 ~ 11412521 (+) True G395818
TU469256 lncRNA downstream 482441 11443645 ~ 11443866 (+) True G395838
XM_034301073.1 mRNA upstream 1967 10930341 ~ 10935261 (+) True rpl9
XM_034301072.1 mRNA upstream 21015 10906335 ~ 10916213 (+) True ugdh
XM_026943259.2 mRNA upstream 31814 10897933 ~ 10905414 (+) True smim14
XM_026943252.2 mRNA upstream 64665 10839433 ~ 10872563 (+) False pds5a
XM_026943023.2 mRNA downstream 77763 11038967 ~ 11216849 (+) True adgrl3.1
XM_026943024.2 mRNA downstream 77763 11038967 ~ 11216849 (+) False adgrl3.1
XM_026943025.2 mRNA downstream 77763 11038967 ~ 11216849 (+) False adgrl3.1
XM_026943026.2 mRNA downstream 77763 11038967 ~ 11216849 (+) False adgrl3.1
XM_034301192.1 mRNA downstream 300294 11261498 ~ 11265170 (+) True smim18
TU468825 other upstream 31833 10897958 ~ 10905395 (+) False smim14
TU468733 other upstream 275525 10660946 ~ 10661703 (+) True G395365
TU468586 other upstream 420859 10506590 ~ 10516369 (+) True G395242
XR_003404491.1 other upstream 698029 10199323 ~ 10239199 (+) False LOC113544300
XR_004577527.1 other downstream 390983 11352187 ~ 11402811 (+) False prom1b
XR_004577528.1 other downstream 390984 11352188 ~ 11403274 (+) False prom1b
trnai-aau_21 other downstream 818480 11779684 ~ 11779757 (+) True trnai-aau_21
trnai-aau_22 other downstream 819266 11780470 ~ 11780543 (+) True trnai-aau_22
trnai-aau_23 other downstream 821186 11782390 ~ 11782463 (+) True trnai-aau_23

Expression Profile