RNA id: XR_004577527.1


Basic Information

Item Value
RNA id XR_004577527.1
length 3195
RNA type misc_RNA
GC content 0.48
exon number 29
gene id prom1b
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 11352186 ~ 11403274 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTTTCCTGCTGATACTTGAACTTGCACACAGCTCATCCGCGctcacacacagaacacacacacacacacacacacacacacacatgcacgagCGTCCAAACACCAGCGTGCACGCGCGTCAGACAGTCTAGCCTCTCTGGCGCGAGCTTGTGCATTAGAGGAGTTGAGAAAAGCTTCCAGAAGGGAATAAACCGCACCGCGGAGCGCGTGCACTCAGGATGTGAGCCGTAAAACCGACTTGACAGCAACCAGGTCTAAGCCTCTAGATTCCTTCTTTCAGTTTTCTGCACTTGCTGAAACATCCCCATCTGTTTCATAACATTCTCCAGAAGTCAGAAGTCAGGCTTCACGTCTTGTGAAGCAGTGCACCTGTTGTATTCCGTGCTACAAGTTGTGTCGGGCTTTTTAAAAGCGTGCAGCACAAGTTGGGtctgtggatgatgatgatgatgatgatgatggtgaggatgatgatgatgatggtgatgatggtgatgtgcTGCTGGAGTTTGGGCTCCGGTGCCGCGCGCGGGGAACCGCAGGCTCCTCACGAGGACACGCTGGACTTCGGCTTTGTCCCGGCGGTGGTGTACGAGACGCACGCGCACTATGAACCCGGAGCCGTGGACGTGCTGTTTCACTTAGTGCACGCGTTTCTGCACACGGTACAACCAAACCCGTTCCCTGCAGatcTTATTGTCAGGATGTTGCAACAAAACATGAATGGAATCAAACCAGAGGAGCTCCAGaagCCGGAGAACATTGTCCTAACGCTACAGGCCATTTATTATGAGATCGGCTTCATCGTGCTGGCAGCGCTGGGTGTTGTGTTCGTGCTACTGATGCCGCTGGTGGGTTTATTTTTCTGCTTGTGTCGGTGCTGTGAGAACTGCGGAGGCGAGATGCACCAAAGGCACCGCAAAAACGCTGACTGCCAACGTGGCTTCTATACAGTCTCGCTTATCACGTCATCTGTGTTTATCGCAGTGGGTGTACTGGTTGCCTACACAGGAAGCCACAACATCACATCCCAGATCAAAAGTACCAAACGACTCGTCAGCTCCAACATAAAAGACCTGAAATCACTGGCCAGTTATACACCAGCGcaaATCGAGTATCTGACTGCACAATACACAACAGCCAAAAATAAAGTTCTCTCCAATCTAGACAACATTGGGCCGTTGTTGGGTGGGCAGATACACAAGCAGCTGGACAGAGATGTGATGCCAGCGCTAGACAACGTACTGCGCATGGCAGCAGTCAAAGTGGAAAGTGCTATTAAAGcAATGCGAGACACTAAGGAGGCTTTAGAGAATGTGAGCACATCCTTAGAGACGTTACAAGAAGCTACTACCAAGCTGCGGAGGTCTTTACAGTCGGAGCGCAGTTCACTCTCAAACACACTCCACGATCCAGCCTGCAGCAGCGGAAACGCCACACACACGTGCGACAACATCCGGGCCGCACTCAACCGGCTCGCTGTCAGCGCCAACTTTAATGggCTACCAGATGTCAGTCCTCAGTTAGCAAATCTAGAAACTGTGATGGAGACGGATCTCAGCTACATTGTACAGAAGgGCTATTCTGCTTTTAATGACACTTCCAGGATAGTGAGCGAACAGACACAAGACTTCGTGAACACACTGCCCAAAGTGAAGGCTTTGTTGGATAAGTCAGGAGCAGAAATTGTTGCTTTCACCAATACGTTCCCGGTGGAACCAGCACTGGAGAACTTCACTCGGTTTCTGACAGAAGCAGAGAAGGACATAGAAGCGCTCTACCCACAGATTGACCAGTTTGATTTTTACAGgTGGATAGGGTGTGTGGTGCTGTGCTGCATGGTTGTGCTGATCTTGGCTTTTAACCTTCTGGGTTTGATGTGTGGAATGTGTGGCCATGATAAGAACACCACACCTACAACACGTGGCTGCCTCTCAAACACAGGCGGCAACCTCCTCATGGCAGGCGTTGGCTTTAGCTTCATCTTTTCATGGGTGCTGATGGGAGTTGTGGTCACCACTTTTGTTACTGGAGGAAATGTGGAGAAGCTCGTTTGTGAGCCTCTGGCCAACAGACAGCTGTTTatgATCATAGACGCACCATACGTGGTCCATCCTGGCAAAAAGAACTTCCTCCCCGGAATGCTGTTCCAAAACCACAACATTGATCTTACCATCGGCAgcctgtacagtgATTGTTATGAGAATAATGGCATATATTCTGCACTACAACTGGAGAACCAATTCCACTTCATCCAGTTCGTCAACAGAACCGTGAATAACCATAATCTGGCAGAGATATTTGAAGGGGTGATGGTAGACTTGGAAGGAATAATCCTGctggaagaagaaggaaaagataATCTCATCAATTTTGCCAATGCAGGCCTTGGGGACATCAACTATGAGGCCTACCTTTCAGAGGTCAATAAAGGAGTAACTGTTGTAGATCTTCTCTCCTTTGCCAATGAATTGGAGGCCGAGGCAGACCATCTGCCACGTGGTGCTCTCGGAAATGCACTAAAAGGCCATGCTAGCAGCATCAGACAGATCCATAAAGAGCAAGTAGTGCCCATGGAGCAAGCCATGAAATTTGTCAGAGCCAGGAGCTCATTAAGTCAAAGTATCAGGTTACTACAGACCACAGTTGAAGAACTTCCTACTAAAGTGACTAATGTGCTGAGTGCCATTGATGCAGCTGAGTATCTAATTGCCAACAATGCTTCACATGTGGTCAAAAAGGAGACAGATAAATACACAAAGAATCTGATGGGATACCTCAAACAATATGTTAACTGGGTTCAGCTttcgTTAACGATGGAGGTAGCTCAATGCAAACCCATCAGTAACATCATTGACTCGTTGGAGATTGTTGGCTGCAGTTTCATAGTGGACTCAGTGAACACATTCTGGTTCGGTCTGGGTGGCTGCTGTTTGTTCCTTATCCCCAGTATCATCATGTCTGTCAAACTTGCCAAATTCTACCGCAGAATGGACACAGAGGATGTATTTGAAgaTAAGGACGCCAATATCATTGGTTATCTTAGTGATCACATATGTGGCATAAATTACCCCGTGATGGTCAGTGGTGGAAGCTAAAAGCTCAGAATTTCAGGAAAACAGAGATAGAAGAGACTTCGCACAAACGATGAGACTACACTTGGCACAGAGAACTGGAGTTAAACAGTCCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468936 lncRNA upstream 87018 11261525 ~ 11265169 (+) False smim18
TU468965 lncRNA upstream 132122 11219854 ~ 11220065 (+) True G395568
TU468850 lncRNA upstream 376559 10975416 ~ 10975628 (+) True G395474
XR_003404505.2 lncRNA upstream 474294 10876855 ~ 10877893 (+) True LOC113544427
TU468807 lncRNA upstream 540465 10810534 ~ 10811722 (+) True G395437
TU469224 lncRNA downstream 8321 11411132 ~ 11412521 (+) True G395818
TU469256 lncRNA downstream 40834 11443645 ~ 11443866 (+) True G395838
TU469258 lncRNA downstream 146658 11549469 ~ 11552542 (+) False ptpn9b
TU469281 lncRNA downstream 253779 11656590 ~ 11660349 (+) True G395863
TU469368 lncRNA downstream 366094 11768905 ~ 11781667 (+) True G395934
XM_026942880.2 mRNA upstream 4612 11330929 ~ 11347575 (+) True tapt1b
XM_026942913.2 mRNA upstream 29623 11300778 ~ 11322564 (+) True ldb2b
XM_026942914.2 mRNA upstream 29623 11301294 ~ 11322564 (+) False ldb2b
XM_026942917.2 mRNA upstream 30314 11300780 ~ 11321873 (+) False ldb2b
XM_026942916.2 mRNA upstream 30315 11300779 ~ 11321872 (+) False ldb2b
XM_026942898.2 mRNA downstream 6389 11409200 ~ 11411027 (+) True fgfbp2b
XM_026943193.2 mRNA downstream 14106 11416917 ~ 11418647 (+) True fgfbp1b
XM_026942912.2 mRNA downstream 42331 11445142 ~ 11448947 (+) True uchl1
XM_034301155.1 mRNA downstream 47621 11450432 ~ 11510916 (+) True limch1a
XM_034301151.1 mRNA downstream 47625 11450436 ~ 11510916 (+) False limch1a
TU468825 other upstream 446792 10897958 ~ 10905395 (+) False smim14
TU468733 other upstream 690484 10660946 ~ 10661703 (+) True G395365
TU468586 other upstream 835818 10506590 ~ 10516369 (+) True G395242
XR_003404491.1 other upstream 1112988 10199323 ~ 10239199 (+) False LOC113544300
XR_004577523.1 other upstream 1127383 10199323 ~ 10224804 (+) False LOC113544300
trnai-aau_21 other downstream 376873 11779684 ~ 11779757 (+) True trnai-aau_21
trnai-aau_22 other downstream 377659 11780470 ~ 11780543 (+) True trnai-aau_22
trnai-aau_23 other downstream 379579 11782390 ~ 11782463 (+) True trnai-aau_23
trnai-aau_24 other downstream 379879 11782690 ~ 11782763 (+) True trnai-aau_24
trnai-aau_25 other downstream 380998 11783809 ~ 11783882 (+) True trnai-aau_25

Expression Profile