RNA id: XM_026942913.2


Basic Information

Item Value
RNA id XM_026942913.2
length 1882
RNA type mRNA
GC content 0.50
exon number 9
gene id ldb2b
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 11300778 ~ 11322564 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgtccctccctctccctctctgatTGGACGGGCGCGCGCTCGTTGCTgcgtgtggagtgtgtgtgtggtatatgtatgtgtttacGAGCGCCGCGATCCCACGTGCGGCGTGTATGGAGGCGGCGGCCCGCGCGCGGACTCGGCACCCGGGACGATGAGCGGCGCGCCGCGCGACCCTTTTTACTCCTCGCCGTTCGGCCCGTTCTACCGGAGGCACGCGCCCAGCGCCGCGCAGCCGCAGTACCGCATCCACGAGCTCAACAAGCGGCTCCAGAGCCGAAGCGAGgaTTGTGATATACTATGGTGGGATGCGTTTTGCACCGAGTTCTTCGAGGACGATGCAACATTAACACTCTCCTTCTGTCTCGAGGATGGACCAAAGACATATACGATCGGACGGGCGCTGATCCCCCGTTTCTTCAGCACGCTGTACGAAGGAGGAGTGTACGAGCTGTTTTTCGAGCTCAAGCACACAAAAGAGTCATTCAACAGCTCAACCATCACTGTAGACTGCCACCAGTGCACCATGATAACACAACATGGCAAGCCCACATTCACAaagGTGTGTACAGAGGGCCGTCTGATTTTGGTGTTTACCTTCGATGACCTCATGAGAATCAAGACATGGCACTTCACTATCTCACACTACAACGAGCTCATTCCTCGCAGCATGCTGGCCGTTCATGCACAAGACCCTGGAGCTCTGGAGCAACTGTCCAAAAACATCAGCAGAGTGGGACTAACCAATCTCACGCTGAACTACCTCAgactgTGTATGATTCTTGAGCCAATGCAGGAGCTGATGTCAAGGCACAAAACATACGGCTTGAGTCCCAGAGACTGCCTGAAGACCTGCCTCTTTCACCAGTGGCAAAGGATGACAACACCACcagTCGGACCTTCGCCCAACTTTAAGACAGAAATTTTTCAGTCAAGTTCCAAAAAATCGGAAGCAGCCAAACCGACAGcgaagagaagaagaaggcgGAACTCGGCTGGCAGCGCATCCAATAGCAGCGCAGGAAACAGCAAGAAACGCAGCCCAGCCAACAGCTTCAGTTTGCCCACGCAGGATGTGATGGTGGTGGGGGAGCCCTCTCTGATGGGAGCCGAGTTGGGAGACGTGGACGAGCGTCTGATCACCAGGCTGGAGAACGAGCAGTACGACCCTGCTGGCGGTCTCCGGGACGACGGTCGCCATGACTACACCAACTCGCAGGCACTCGGCAACCGGGACGGCGAGCCCACCGCCGTGGCGATGCAGCGGCCGGAGTAACGGGAGCGCTACAGGAAAGGATCGGGCGAGGGGTGTGAGAGCGTGCTCATCTGGGGATGGAGAGaaggaatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgagaaagAGAGTTATGACCTATATGACAAATGATGTCATCCAGTTTGTAAAACTATTACAATGGCTTTAATAGCATTTTTCTCAGTCTCCATCATCACAAACAGAAACCAATGTAAGAAAACGATAATCATGAAACATACATTCCCATTTCATAAGAAAGCTTTATAAATAAGCTGCGCTATTAACTACTTTCATACCAGAATTTTTAAGCTTTTCTGTAATGATTCAGCTGTTCTGTAACGTTTGTTTCGGCCTTCCAAAATTGACTTTAAACTGTCTACTTTGTGAGTGTTGTGATgttttttactgctgcacaaTCTGCAACTgcggattttttccccctttattACTTAATTGTTTAATGCATAATGTAAAATACCTGCAGGTATGTGTATTTACCGTTAAGTGTGTATTTTCTGTATGCTTTTCAACTATTTGCATCAATAAATTGTGTTTGGTTATGATAACAGGCTAAGGCCTTAGTTGCttatttaatat

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003712 transcription coregulator activity molecular_function
GO:0030274 LIM domain binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468936 lncRNA upstream 35609 11261525 ~ 11265169 (+) False smim18
TU468965 lncRNA upstream 80713 11219854 ~ 11220065 (+) True G395568
TU468850 lncRNA upstream 325150 10975416 ~ 10975628 (+) True G395474
XR_003404505.2 lncRNA upstream 422885 10876855 ~ 10877893 (+) True LOC113544427
TU468807 lncRNA upstream 489056 10810534 ~ 10811722 (+) True G395437
TU469224 lncRNA downstream 88568 11411132 ~ 11412521 (+) True G395818
TU469256 lncRNA downstream 121081 11443645 ~ 11443866 (+) True G395838
TU469258 lncRNA downstream 226905 11549469 ~ 11552542 (+) False ptpn9b
TU469281 lncRNA downstream 334026 11656590 ~ 11660349 (+) True G395863
TU469368 lncRNA downstream 446341 11768905 ~ 11781667 (+) True G395934
XM_026943261.2 mRNA upstream 7889 11270770 ~ 11292889 (+) False qdprb1
XM_034301189.1 mRNA upstream 18022 11270771 ~ 11282756 (+) True qdprb1
XM_034301191.1 mRNA upstream 18129 11270526 ~ 11282649 (+) False qdprb1
XM_026943260.2 mRNA upstream 18129 11270771 ~ 11282649 (+) False qdprb1
XM_034301190.1 mRNA upstream 18131 11270771 ~ 11282647 (+) False qdprb1
XM_026942880.2 mRNA downstream 8365 11330929 ~ 11347575 (+) True tapt1b
XM_034301396.1 mRNA downstream 29622 11352186 ~ 11403274 (+) False prom1b
XM_034301395.1 mRNA downstream 29623 11352187 ~ 11403274 (+) False prom1b
XM_034301399.1 mRNA downstream 29623 11352187 ~ 11403274 (+) False prom1b
XM_034301398.1 mRNA downstream 29623 11352187 ~ 11403274 (+) False prom1b
TU468825 other upstream 395383 10897958 ~ 10905395 (+) False smim14
TU468733 other upstream 639075 10660946 ~ 10661703 (+) True G395365
TU468586 other upstream 784409 10506590 ~ 10516369 (+) True G395242
XR_003404491.1 other upstream 1061579 10199323 ~ 10239199 (+) False LOC113544300
XR_004577527.1 other downstream 29623 11352187 ~ 11402811 (+) False prom1b
XR_004577528.1 other downstream 29624 11352188 ~ 11403274 (+) False prom1b
trnai-aau_21 other downstream 457120 11779684 ~ 11779757 (+) True trnai-aau_21
trnai-aau_22 other downstream 457906 11780470 ~ 11780543 (+) True trnai-aau_22
trnai-aau_23 other downstream 459826 11782390 ~ 11782463 (+) True trnai-aau_23

Expression Profile