RNA id: TU468965


Basic Information

Item Value
RNA id TU468965
length 212
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G395568
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 11219854 ~ 11220065 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTAATAGAATcagtagcctttttttttaatgcgaGAAAAGCTCTGATGAAATAGATCGAAATTATTAAGCACCTGATGGTGCTTTGAGTCAGATAACAAACCACTGGTTGCCTCTCTGAGAAGTTCAGGGATGGATTTTTCTTCATAGGCAAGCATAATATTCCTtacttttacacaaaatggctgTGCATGTAGAGGGAATGTAATCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468850 lncRNA upstream 244226 10975416 ~ 10975628 (+) True G395474
XR_003404505.2 lncRNA upstream 341961 10876855 ~ 10877893 (+) True LOC113544427
TU468807 lncRNA upstream 408132 10810534 ~ 10811722 (+) True G395437
TU468799 lncRNA upstream 438005 10781606 ~ 10781849 (+) True G395429
TU468793 lncRNA upstream 451731 10767606 ~ 10768123 (+) True G395423
TU468936 lncRNA downstream 41460 11261525 ~ 11265169 (+) False smim18
TU469224 lncRNA downstream 191067 11411132 ~ 11412521 (+) True G395818
TU469256 lncRNA downstream 223580 11443645 ~ 11443866 (+) True G395838
TU469258 lncRNA downstream 329404 11549469 ~ 11552542 (+) False ptpn9b
TU469281 lncRNA downstream 436525 11656590 ~ 11660349 (+) True G395863
XM_026943023.2 mRNA upstream 3005 11038967 ~ 11216849 (+) True adgrl3.1
XM_026943024.2 mRNA upstream 3005 11038967 ~ 11216849 (+) False adgrl3.1
XM_026943025.2 mRNA upstream 3005 11038967 ~ 11216849 (+) False adgrl3.1
XM_026943026.2 mRNA upstream 3005 11038967 ~ 11216849 (+) False adgrl3.1
XM_026943178.2 mRNA upstream 258650 10937228 ~ 10961204 (+) True rfc1
XM_034301192.1 mRNA downstream 41433 11261498 ~ 11265170 (+) True smim18
XM_034301191.1 mRNA downstream 50461 11270526 ~ 11282649 (+) False qdprb1
XM_026943261.2 mRNA downstream 50705 11270770 ~ 11292889 (+) False qdprb1
XM_034301189.1 mRNA downstream 50706 11270771 ~ 11282756 (+) True qdprb1
XM_026943260.2 mRNA downstream 50706 11270771 ~ 11282649 (+) False qdprb1
TU468825 other upstream 314459 10897958 ~ 10905395 (+) False smim14
TU468733 other upstream 558151 10660946 ~ 10661703 (+) True G395365
TU468586 other upstream 703485 10506590 ~ 10516369 (+) True G395242
XR_003404491.1 other upstream 980655 10199323 ~ 10239199 (+) False LOC113544300
XR_004577527.1 other downstream 132122 11352187 ~ 11402811 (+) False prom1b
XR_004577528.1 other downstream 132123 11352188 ~ 11403274 (+) False prom1b
trnai-aau_21 other downstream 559619 11779684 ~ 11779757 (+) True trnai-aau_21
trnai-aau_22 other downstream 560405 11780470 ~ 11780543 (+) True trnai-aau_22
trnai-aau_23 other downstream 562325 11782390 ~ 11782463 (+) True trnai-aau_23

Expression Profile