RNA id: trnai-aau_23


Basic Information

Item Value
RNA id trnai-aau_23
length 74
RNA type tRNA
GC content 0.61
exon number 1
gene id trnai-aau_23
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 11782390 ~ 11782463 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCCGGTTAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTACGGGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469368 lncRNA upstream 723 11768905 ~ 11781667 (+) True G395934
TU469281 lncRNA upstream 122041 11656590 ~ 11660349 (+) True G395863
TU469258 lncRNA upstream 229848 11549469 ~ 11552542 (+) False ptpn9b
TU469256 lncRNA upstream 338524 11443645 ~ 11443866 (+) True G395838
TU469224 lncRNA upstream 369869 11411132 ~ 11412521 (+) True G395818
TU469397 lncRNA downstream 42448 11824911 ~ 11876241 (+) True G395955
TU469856 lncRNA downstream 594746 12377209 ~ 12379424 (+) True G396314
TU469885 lncRNA downstream 624016 12406479 ~ 12497688 (+) True G396338
XR_003404499.2 lncRNA downstream 680058 12462521 ~ 12463044 (+) True LOC113544390
TU469935 lncRNA downstream 764323 12546786 ~ 12555029 (+) True G396380
XM_026942929.2 mRNA upstream 644 11764033 ~ 11781746 (+) False LOC113544239
XM_034301060.1 mRNA upstream 644 11764038 ~ 11781746 (+) False LOC113544239
XM_034301061.1 mRNA upstream 644 11768617 ~ 11781746 (+) False LOC113544239
XM_026942930.2 mRNA upstream 644 11768815 ~ 11781746 (+) True LOC113544239
XM_034301062.1 mRNA upstream 644 11768972 ~ 11781746 (+) False LOC113544239
XM_026943256.2 mRNA downstream 3691 11786154 ~ 11790153 (+) True si:dkey-245p14.4
XM_026943262.2 mRNA downstream 10107 11792570 ~ 11804263 (+) True smc2
XM_026943102.2 mRNA downstream 47993 11830456 ~ 11841230 (+) True fbxo10
XM_026942894.2 mRNA downstream 68839 11851302 ~ 11859724 (+) True tmem192
XM_034301103.1 mRNA downstream 69689 11852152 ~ 11859725 (+) False tmem192
trnai-aau_22 other upstream 1847 11780470 ~ 11780543 (+) True trnai-aau_22
trnai-aau_21 other upstream 2633 11779684 ~ 11779757 (+) True trnai-aau_21
XR_004577528.1 other upstream 379116 11352188 ~ 11403274 (+) False prom1b
XR_004577527.1 other upstream 379579 11352187 ~ 11402811 (+) False prom1b
TU468825 other upstream 876995 10897958 ~ 10905395 (+) False smim14
trnai-aau_24 other downstream 227 11782690 ~ 11782763 (+) True trnai-aau_24
trnai-aau_25 other downstream 1346 11783809 ~ 11783882 (+) True trnai-aau_25
trnai-aau_26 other downstream 1953 11784416 ~ 11784489 (+) True trnai-aau_26
TU469458 other downstream 314508 12096971 ~ 12102765 (+) True G396005
XR_004577482.1 other downstream 1464474 13246937 ~ 13292141 (+) True zcchc7