RNA id: XM_034301060.1


Basic Information

Item Value
RNA id XM_034301060.1
length 3891
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC113544239
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 11764033 ~ 11781746 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCTGCCTGAAGCCAAGACTCTCTTCCAAAGGAAGTCTTTATTCCATCATCAAGGATGTCATGCCACCAGTCTGTGAGGAGGAACTCCTGGTGCCCAGCTCTGAAGCGAGTATACAATTAACCTGGTCACATTGATTGCTCGGGATTGATCGGGAAGGCTTCATAGACTGCCAGTCTCCTGTGCAGTTTAACAGCATCACATCTCTGAAAGCAGCTTTCTCGCTCATCACTTGCTCCACCAGGGCAACCTGGTCAAGCCCAACTGCGTGTGCTTCACCTCTCACCGTCTCGCCAATGTCAACCGCCACTCAACCCTGGCACCTGAACGGAGgtgtTGGTTTCCCATTCAATGAGGAGAGAGTCATGTCAGGTGGGGTGAACAGGAATTCAGCAATAATCGGAGGCATTATTGCTGTGGTGATCTTCACCATCCTGTGCACTCTGGTGTTCCTGATTCGTTACATGATTCGCCACAAGAGAACGCACCACACAAATGAGTCCAAAGAGGATGAGCACTCTGAATCAGCTGACACGGCTATCATCAGCACTGAGCCCAATTTCACCGAGACCATCGACGAAAGCAAGAAGGAATGGTTCATCTAACAGAATGGGGACATACATTACTTAAATAAGGATCAATACATACCCCCCTCCCATCTCTCTCCCTACTGTATgcgtacctgtctgtctctctctctctccccctctctgtctctctgtctttccctgTCCAGGAGTCCAGCTTCAATGTTTTCTAAAAGTGCAGCTGTTTACTGTATGCATGATAGAGCCAATGGGGGTGGGCAAGAACCAAGACCACAATGGGATCGATGACTGAAGGTCTGGCCGTCTTCTGATTCAGTTCTTATGGGGAAAATATGGAGCCTGAAGATTAGATGAGTGGGAATGTCAGACTGAAAAAAAGCACCCTCTTTGTTGGAACTAATCCAAATCTTCTCTGACCTCGTTAGACCTCTAGCTACAAAATCAAATCCAGAGGCCAGCTTTAGCTGTGGTTGGATTTAGAAACGTGCTGTTGAGATTGACGGAAACAGCACTACAATAATGAACTATATCAGCGATGTGTTCATGATCTATGCCAGCCAAACATCCCTAAGCAGCAATGGTGGAGATAAAGAGCCTTACAACTAGAGCAGTGCAGGAGGAATTAGCTGAGGGTGCCATTAAGAATGTGGCTAAATCTGACCAACAaaagcacaacattaaatacagcTTCCCATAAAGAAATGATAAACTACCACTCTCAGCTGAATCTCTTAGTCCATTTACACTGATATAGAACTgtcactttttttaaaccatcaGTTTATGAGCAGGGCCATTACATAATCAGATATATACATTCACTAATGCAAAGTTAAACCTAATAATAACTGGGGAGGGTTTTACAAGATTTACCTCGGATTGAAAATACACAATTAGTTTGTTGTCAACAACAATTCACTACagatatgcatttttattacttgtattaCTTTTCTGATGGATATTTTAGACcaaaatattattctttttttttccaaaaagaaaatgatataTGGCACAAAACACTAAAGGCTTATGGCACATGAGCAAAAGTAATGCATAAGATCCcagtattgtttttgtttttttgttttcttggtaTTTTCATTCTATATGTGCAGTCTATTCCATTCTATTGTGCAGTCTAGTCTTACAAATATATACAAGAGTATATAAactgtattaaattatttgtttccAAGACATGATAAAAGCCAAATTCCAAATAAGTTATAAGTAGCATTTTTGGGGTTTCCCGTGTGGAGTTCATGTTGCTGCTCACGGCCGGTTAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTACGGGCCACTGAGAATTTTCCACTATTATCGCTTGCCTGTCTGTGAACAATACCTTACGACAAGCCACAAGAAACAACTGACTGCTGCATATAATGCGTGCACTCTTATTTACTGGTCATCTGAAAACACCTGTGCTGGAAATACAGACATTAATTGTGCTACTTACCTTATGTCTCCTTCAAGTGAGTTTTCTACTATCTGAAAATCCTTAAATCCTTTCAACTATTGCTAGCTGTAATATCTGGGTCCTGTGCAAAAGCAGTCTCTAGCCTCTTTTCCGTTTCTCGAAAATGCAACCTTTTCAGTCTACTGCATTTAAAAGCCTCCTCCACTGATAGGGGCCCCGGGTAGTCAGTTCCACTTTTCTCTCTCCAATGATGACCCTGTTAATGGGtaagaaaacaacagcaaaaaatatTCTATCAAACATTCAAACTGGCTTTGTCATTAtgccctcaaccctgaccagtttatcagtctctcctGAAGAAAAGCATCCTCACGACATgatgccaccaccaccatgcttcactgtgtggaTGGTGTCTTCAGGATGAGTGAGAACCTTTTTCCACGTTTGCTGAGTTTCCAGCATGCCTTTTTCCGGAATGGATTTTAAATGTACTAATTTTTGCTGATTGCATTACATACACATGCTGTTTAAAGTTATTCTAAAGTTACTTTTTATGGCATTGCGGCGAGTTTGATGTGCTCTTACCGGCCGGTTAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTACGGGCCAGCAGTTTTTTCCACTATGGCAGGTTGCCTGCATGTGAACAATGCTGTACAACAAGCCACAAGAAAACAACTGGCTGCTGCACAGGACGTTAAGAGGGAAAAGCTAAGGTGGACACCCTTAGTTATTGGTCAGCTGGAAATAAACGTTTTAATGCTGCTACTTCCCGGATGTCTCTGTCAAGCAAGTTTTATACCATCTGAGTTAAATTCTCTCAGCTATTGCTAGCCATCAGACAGTTTTGTGCTAGGAACATTACTATGTTGCATGCCAGTAATATCTGGGTCCTGTGCAAACGCAGTCTATGGCCTCTTTTCCATTTCTTGAGTTTTGTTCTTATTTGCTGTGAACTCAACTAGTAAATCTTTTAGATTGTGAATGCCACACCCACGTTTGCGCCACTCCACCCATGTTGTGCAAATTTATGGTCATGAAAATAAtgactgaagaaaaaaagcaacatcCAAGCTGTGATATATGTGGATGCCAATTTTGCCAGCTCATATTCTGTGGAAAAGGGCAGAACACGTCCAGATACAGTAGCCATTGCAAATACAGTCAAAATGTTTGACTCGCTGTTTGTattctttgtgtgtctgttgtgtgttttttttgtttgtttgtttttttttgtaatcaacATATAAAATGCTGTAATAGTACTGATATACAGTAAGTTGGAGCAATGATATATCTACCTTTGTATGTACAGTCTTGAATATCTCATCTTCCCTGTCCCTATTTTGTcaagacaaattaaaaaaaaaaaggcccaaTGGGACAAACTGCAAAAAGTTACTGCAGAGTTACACAAAATTATAGTAAGAAGTACACACTGAGACTGGAACAAATGCACGTCTGTTCTCTCCATCCCCTTTCCTTGGCTTTTCTAAATGGATACTCAAGCACAACATCTCAATGAGGAATTGTTTCATGGGTCAGAATTTCAAACCCTGAAAAGAGACACATTAAGTCATTGTTACTCATGAATTCAGCATAGAATAAAGCAAAggattttgcttttttgctttgcttttaatCAATTCTTTTAAATATCATGAAGtaattctctatttttttttctttgctgttaatGGTGGCATTATTAGCCACTAACCTGACCATTCAGTTTTGAATATACACTTGTATATAATTAGAATAATTGGAACGAtgcatttctgtaaataaagcTCATTTGTACAACTC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469281 lncRNA upstream 103689 11656590 ~ 11660349 (+) True G395863
TU469258 lncRNA upstream 211496 11549469 ~ 11552542 (+) False ptpn9b
TU469256 lncRNA upstream 320172 11443645 ~ 11443866 (+) True G395838
TU469224 lncRNA upstream 351517 11411132 ~ 11412521 (+) True G395818
TU468936 lncRNA upstream 498869 11261525 ~ 11265169 (+) False smim18
TU469397 lncRNA downstream 43165 11824911 ~ 11876241 (+) True G395955
TU469856 lncRNA downstream 595463 12377209 ~ 12379424 (+) True G396314
TU469885 lncRNA downstream 624733 12406479 ~ 12497688 (+) True G396338
XR_003404499.2 lncRNA downstream 680775 12462521 ~ 12463044 (+) True LOC113544390
TU469935 lncRNA downstream 765040 12546786 ~ 12555029 (+) True G396380
XM_026943249.2 mRNA upstream 3735 11756285 ~ 11760303 (+) True clrn2
XM_026943157.2 mRNA upstream 36426 11705754 ~ 11727612 (+) True clockb
XM_026943256.2 mRNA downstream 4408 11786154 ~ 11790153 (+) True si:dkey-245p14.4
XM_026943262.2 mRNA downstream 10824 11792570 ~ 11804263 (+) True smc2
XM_026943102.2 mRNA downstream 48710 11830456 ~ 11841230 (+) True fbxo10
XM_026942894.2 mRNA downstream 69556 11851302 ~ 11859724 (+) True tmem192
XM_034301103.1 mRNA downstream 70406 11852152 ~ 11859725 (+) False tmem192
XR_004577528.1 other upstream 360764 11352188 ~ 11403274 (+) False prom1b
XR_004577527.1 other upstream 361227 11352187 ~ 11402811 (+) False prom1b
TU468825 other upstream 858643 10897958 ~ 10905395 (+) False smim14
TU468733 other upstream 1102335 10660946 ~ 10661703 (+) True G395365
TU468586 other upstream 1247669 10506590 ~ 10516369 (+) True G395242
trnai-aau_23 other downstream 644 11782390 ~ 11782463 (+) True trnai-aau_23
trnai-aau_24 other downstream 944 11782690 ~ 11782763 (+) True trnai-aau_24
trnai-aau_25 other downstream 2063 11783809 ~ 11783882 (+) True trnai-aau_25
trnai-aau_26 other downstream 2670 11784416 ~ 11784489 (+) True trnai-aau_26
TU469458 other downstream 315225 12096971 ~ 12102765 (+) True G396005

Expression Profile