RNA id: TU469458


Basic Information

Item Value
RNA id TU469458
length 3769
RNA type TUCP
GC content 0.38
exon number 2
gene id G396005
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 12096971 ~ 12102765 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCAGGTTGATAGAACTTTATTTCAGCAAATataacatacactgtaaaaaaatgcatttggaaCTTCTATATCAACAGCTGGACAGATGTGCATAAGGGAATAAAGGAGGATTTTCTCCTTCTAGTTTTTCTATTTCGCTCTGACGTGGGTGTGAATGCGGAACGCTGTTAAATAAAACTCCAAATTAATTCAAAAGATCATGAAGCGACACTACGGACAGACCCATACTGAACATCTGGAAATTTTGAACGTTTTGTCAGGTGCAAAATATAAACTATCCACAGAAATGCACACGGAGAAATACAgagaagtgagaaaaaaaaaccactgtaGGCTAAAATTCCCTAGAAGTCTCTTTCTCTTCTACTCAAAGGCACTGTACATTTCAGGACAGCTAACAGATGACACATAacaaaaatctgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgagtgacacaaAACGCTCCagtgagtctgatctcaggtTTGGCGTCGCCCCCAAAAGCCGGAGCACAAACACAGacgcctgtgtgtgtatgtgtatgtgtgtgtgtgtgtgtatgtgtgtgattataattgTATCTCATCAGCCACTGAATCAATGTGTCTGTAACATAACGTTTTGTGTTAAAGGAGTagtccaatgtttttttttaacctaattttTATTCACCACATCCGTAACGTTCGTATTAGTAGCAGAGATGTATAGAATTTCTCCACCTTTTCTTGTAGTagaaaaagaacacacaaaaaaacaatgtgtcTACTGGTAACTTGCTTATAACAGAAGTCTAGGGGAAGTAAATGCTTCTGCCATACAAATTTCCACAGTCTGTAAAAAAGAGTCATATTTCCAGATTCAACATATGTACACCTGTCCTTCAGCAGGAATGTAGTCAAGCCCACTACTGTCAAGTCCAAGACAAGTTCAGCTAAGAGTGAGTCAAGACCGAGTCCTAAAGGGGGTTGAGGCCAAATCAAGATTGTGTTCAAATGAGTCAAGATGGAGTTTCAATGAGTCAAAATCGAGTTCCAATGAGTCAAAATTGAGTTTCAATGAGTCAAGATCGAGTTTCAATGAGTCAAAATCGAGTTCCAATGACTCAAGATGGAGTTTCAATGAGTCAAAATGGAGTTCCAATGAGTCAAGATGGAGTTCAATGAGTCAAAATGGAGTTCCAATGAGTCAAGATTGAGTTCAAATGAATCAAGACCGAGTTCCAATGAGTCAAAATCGAGTTCCAATGACTCAAGATGGAGTTTCAATGAGTCAAGATGGAGTTCCAATGAGTCAAGATGGAGTTCAAATGAGTCAAAATGGAGTTCCAATGAGTCAAAATGGAGTTCCAATGACTCAAGATGGAGTTTCAGTGAGTCAAGATGGAGTTCCAATGAGTCAAGATGGAGTTCAAATGAGTCAAAATGGAGTTCCAATGAGTCAAGATGGAGTTCAAATGAATCAAGACCGAGTTCCAATGAGTCAAAATCGAGTTCCAACTCAAGAGTTCCAATGAGTCAAGATGGAGTTCCAATGAGTCAAGATTGAGTTCAAATGAATCAAGACCGAGTTCCAATCAGTCAAAATGGAGTTCCAATGAGTCAAGATCGAGACAAGCATTAACTTTAGTTTCACATATGCCAAAACAAAATTGCAAATTCTCTTGAGAATATGCAACTATGAATATGCAATTACAGCAAAAAATTGCTTGTTCGTTGTGAACAACATCCTTTCTCACTCTACCAATGGTAAAAAGCTCTTTTAGCAGCCAATGTCAATATTCACTATTAAATCATTAGTTGAGTATGCTAGTTCTCTCAGCTAGTTGACTTGATTTGTGCGTCGCATCAATGATTAgactgttttctagaagaaggtcAAATGTCAAAAGGTCAAATGTCTTGTTGGTAGCGGAGGCATCCCAATTAATGTCGATTTCTACATGTTAATTACTATTTTACtgtgataaagagagagaaaaatgcaaTAAAGCACATTGCAatttttctggaaggagtctccagtgtcagtgcagcattttttttttctcttattaacttcaagagaaagaaaaaaatagcctggtgagggaatgcCCATTACTGATTATAGAAACTTATTCATTTCATGGACAtcccacagcattaaatgtaactataaatggttaaaaagtatgatatgttgttcattaatacatttagAATTGTTGATAAGCTGctggggtataagaggaataaaacacttcaggacatgctgttataggaaaataacaatTTGgcgtgctaacagtaactctgcttcgtgTTGGAGCACATCACACCAACCCactggtgattattttcctgtaactgcaagTATAGAagttttttatttcacaaatatcTTTGACTAAATAATACATGAAGTTCTgaataaacaggtttttttttttgtctgtggtaACACAGTGTGTGCTATAAATGCAGTGGATACCAATTAGGCTAACAGTGTTCAAGAATAATGTGTGATAATCATAACTCATTAAAGTAGAGCTGCTTTAGGTAGAAATTTGCTAATCCTGTATCCTCTTTATTGAGCTTACATATTCTATATTCgtcatttaaacagaaatagtGCAATGATGTCCATAAGGTACAGTAAACAAGGACACACACCAACATAAATGGAACTAGAATAAATTCTGTTAGAAATATGTCAGCAgctctgtgagtgtgagtgtgtgtatgtgtgtacgtgtgtgttcaCATTTCCCTTCAGAAAGTGAGTCTAATGAGTCTCAATCAAAGTGGGACTTTTTGCACATGGCTGTATGTGAacatgttattgtgtgtgtgtgtgtgtgtgtgtgatattccTACTTCTTGCCCAGAGGGATACAGCAGATTCACTCTCGAAAATGCTCAACGAcgtcaaaatgacaaaaataaaatgcattgtaTTAATCAATcctattaatttcttttaaatacaaatgttaCACAGCGAGAGGGAAATATACCTTTTTCTAAGCCATTAGTAATATTAGTACTTCGTTTCTACAAGTGACGCCTAAAAACGTGCTTTTGGTTTCCCCTTCctcttttagaaaaaaaaaaagaaaaacgcaTGACGACGATTACGACAAGTAGCCGTCATCTTCGTCATCGTCGTCATATTCTTCGTCATCTCCCATATCCTCCTGATCGTTCAGGACGTCGTCCTCGTCGTCTGAGAGCGACGAGTCCCCACTTCCAAAGTCTCCAGAACCCtccaatgctgcaaaaaaacacacAGATGCCCACCACATTCGGCCGGGCCCATCTTGCTTGACCCGGCGACCTTGTTTCCATAGCGATCCACACACCAGCACTGTCCACTGCTACCAAGGCATTGCTGAGGCTTATAGAAGCCGTCCTCATCGCAGGAGGGGACATATTGACCTACACATGCACATAAAGACTTTGCTTAAAATCAGGAAACGCAACCACTGCCACTACTAACACTCCTCACAGCTAGATCACACTCTCGCTGCATAACATCCTgttaaatgacaaaaacaatgaCAGAAACACATTACGTTATTAAATCTAATGGTAATattcagtggtttttttttggttcatttttcaTTCCATGCCTGCAGCTATTGTGACCTTGAgcgagagaaaaagaagagctTGACACCTTAAATGCACAGagtagcttctttttttttttccctcaaattGACTCAAACTCAAATCGAGATGTGTGAAAGATGTTATTTTTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469397 lncRNA upstream 220730 11824911 ~ 11876241 (+) True G395955
TU469368 lncRNA upstream 315304 11768905 ~ 11781667 (+) True G395934
TU469281 lncRNA upstream 436622 11656590 ~ 11660349 (+) True G395863
TU469258 lncRNA upstream 544429 11549469 ~ 11552542 (+) False ptpn9b
TU469256 lncRNA upstream 653105 11443645 ~ 11443866 (+) True G395838
TU469856 lncRNA downstream 274444 12377209 ~ 12379424 (+) True G396314
TU469885 lncRNA downstream 303714 12406479 ~ 12497688 (+) True G396338
XR_003404499.2 lncRNA downstream 359756 12462521 ~ 12463044 (+) True LOC113544390
TU469935 lncRNA downstream 444021 12546786 ~ 12555029 (+) True G396380
TU469945 lncRNA downstream 485905 12588670 ~ 12595804 (+) True G396389
XM_034301363.1 mRNA upstream 10952 12051954 ~ 12086019 (+) True tll1
XM_034301364.1 mRNA upstream 10952 12053384 ~ 12086019 (+) False tll1
XM_026943210.2 mRNA upstream 10952 12054571 ~ 12086019 (+) False tll1
XM_034301365.1 mRNA upstream 13091 12054571 ~ 12083880 (+) False tll1
XM_026943093.2 mRNA upstream 62663 12015219 ~ 12034308 (+) True cpe
XM_034301281.1 mRNA downstream 40902 12143667 ~ 12177662 (+) True ugt8
XM_026942902.2 mRNA downstream 199742 12302507 ~ 12372418 (+) True ndst3
XM_026943198.2 mRNA downstream 311793 12414558 ~ 12417158 (+) True LOC113544392
XM_034301334.1 mRNA downstream 315028 12417793 ~ 12426642 (+) True mettl14
XM_026942986.2 mRNA downstream 324893 12427658 ~ 12434597 (+) True LOC113544289
trnai-aau_26 other upstream 312482 11784416 ~ 11784489 (+) True trnai-aau_26
trnai-aau_25 other upstream 313089 11783809 ~ 11783882 (+) True trnai-aau_25
trnai-aau_24 other upstream 314208 11782690 ~ 11782763 (+) True trnai-aau_24
trnai-aau_23 other upstream 314508 11782390 ~ 11782463 (+) True trnai-aau_23
trnai-aau_22 other upstream 316428 11780470 ~ 11780543 (+) True trnai-aau_22
XR_004577482.1 other downstream 1144172 13246937 ~ 13292141 (+) True zcchc7
TU470464 other downstream 1345110 13447875 ~ 13453718 (+) False klf3
TU470565 other downstream 1623879 13726644 ~ 13775822 (+) False G396887
XR_004577493.1 other downstream 1756904 13859669 ~ 13861258 (+) True LOC117596355
XR_004577484.1 other downstream 2881130 14983895 ~ 15008598 (+) True LOC113525056

Expression Profile