RNA id: XM_034301103.1


Basic Information

Item Value
RNA id XM_034301103.1
length 1529
RNA type mRNA
GC content 0.46
exon number 6
gene id tmem192
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 11851302 ~ 11859725 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAGTCCATTCTGAAACTTTGCAATTGTTTAGCCTATCATTCCTTTTTCTAATGCCAGTCCTGGTTTAAGGGTTTATATAGTCACTTTTCTTATATATATCTAACAACATTACAACTACAGCTCGTGCATTTTTTTCGAGTCGATTCGTTCGAACGGCGAATCGACTCACATTTGACTCATTCGTGAATCGCCCATCACTACTCCAACTAAGCTGAGACAATAGAGCAGTTCACGAGGTCGTTTTTGGCCACTTAAATGCTCTACATGAAAGGAGATGTCACTCTCATGagtaacacaaacacagatttcACCCAAAGCATCGAGGACGACCCTTTGATCGATGGGCCGCTCATATCCCGGAACGCTTTGGAGTCGGGAATCAAAAGAGACTTTCAGAAACTACCAACTACATGGGGAGCCGGTTTACTGACCGTGTTGCATGTGGTGTACGTGAGCGTGTGCGTGGCCCTGGCTGCGGTGTGTTGGTTAACCGACACGCACTCTGCAGAGTGCGCAGCGGCATTGAACGGGGTGGACTCCAGGACCCTGGTGTTGCTCTTGAAGGTGGGCCTGTGGATACTGGTCTTTCTCTTTGAGAGATGTGTGCAGCATCACCACAGCGCAGTGAGGCGGAGAGGATACCTGCAGTTTTATAGGCAAACCGCCAAACTCAAGCACCTGCCATTACTCATACACTCcggagGTAACGCTGCAGTGCTGATAGTAATCGCTCCATCCTCGATGCTGGATAGCAAAGTGAAAAATCTCTCCGTGTATCTGCTGCTCGCCATCATCTGCGTGGAGCTAATTGCATCCGTCATAAGCCTTCTGGTGTATGCAGTGCACGTGGCAAGGTTTAACAGGCAAAGCCCGAGTCCAGACGTCGCAGAAGACGAGAAATCTCATACCTTCTCTGTCACTGCCAGCGACACACACACCGAGATGGGCTTCAGAGATGGCTCCTGTCTCGAAGAGGTGGTGGAGAAACAAGCAGACCTGATCGAGTATCTGAAGCAGCACAACACACTGCTGAGCAAAAGGATCCTGACGCTGACATCACAACAGACCAGAGactgagaggagaagagaagattCCTGTGTTTGACTAGGGTTTTAATGCACGTGTCTGTTGTGCGTTCGTTTGCTGACTGACAGCAGTGGCCGCGGTCGACTAATcacaagggttttttttaacgGGAAAAGAGCCTCCTCTCCTTAACATTGTTTTCATGCTTCCCTGGTAACAGGTCTTGTAAGATAAAGGAATTAATAGGAAGGAAAAAAACCATTCAGTGATCAATCCACCAGCTGTGAAAGCAAGCTGATGCATTGATTTATGGAGACGTGTAAAGAAATTACTGAATAAGGAGCTGATTTCGgattaaatataatcatatatctGTGGAGAATTTTTGGTTCTGAATCTGAATTGCACAGAAGGATAACTTTAAGCTTTCAAGTCTGACTGGGAttgagtgtttattttttttttttcgtggctaatatttaatgcaaagtgttttgtac

Function

GO:

id name namespace
GO:0005765 lysosomal membrane cellular_component
GO:0005770 late endosome cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469368 lncRNA upstream 70485 11768905 ~ 11781667 (+) True G395934
TU469281 lncRNA upstream 191803 11656590 ~ 11660349 (+) True G395863
TU469258 lncRNA upstream 299610 11549469 ~ 11552542 (+) False ptpn9b
TU469256 lncRNA upstream 408286 11443645 ~ 11443866 (+) True G395838
TU469224 lncRNA upstream 439631 11411132 ~ 11412521 (+) True G395818
TU469856 lncRNA downstream 517484 12377209 ~ 12379424 (+) True G396314
TU469885 lncRNA downstream 546754 12406479 ~ 12497688 (+) True G396338
XR_003404499.2 lncRNA downstream 602796 12462521 ~ 12463044 (+) True LOC113544390
TU469935 lncRNA downstream 687061 12546786 ~ 12555029 (+) True G396380
TU469945 lncRNA downstream 728945 12588670 ~ 12595804 (+) True G396389
XM_026943102.2 mRNA upstream 10922 11830456 ~ 11841230 (+) True fbxo10
XM_026943262.2 mRNA upstream 47889 11792570 ~ 11804263 (+) True smc2
XM_026943256.2 mRNA upstream 61999 11786154 ~ 11790153 (+) True si:dkey-245p14.4
XM_026942930.2 mRNA upstream 70406 11768815 ~ 11781746 (+) True LOC113544239
XM_026942949.2 mRNA downstream 25740 11885465 ~ 11892449 (+) True march1
XM_026942926.2 mRNA downstream 50538 11910263 ~ 11929875 (+) True npy1r
XM_026942928.2 mRNA downstream 50538 11910263 ~ 11929875 (+) False npy1r
XM_026942927.2 mRNA downstream 59518 11919243 ~ 11929875 (+) False npy1r
XM_034301225.1 mRNA downstream 96962 11956687 ~ 11989631 (+) True si:dkey-253i9.4
trnai-aau_26 other upstream 67663 11784416 ~ 11784489 (+) True trnai-aau_26
trnai-aau_25 other upstream 68270 11783809 ~ 11783882 (+) True trnai-aau_25
trnai-aau_24 other upstream 69389 11782690 ~ 11782763 (+) True trnai-aau_24
trnai-aau_23 other upstream 69689 11782390 ~ 11782463 (+) True trnai-aau_23
trnai-aau_22 other upstream 71609 11780470 ~ 11780543 (+) True trnai-aau_22
TU469458 other downstream 237246 12096971 ~ 12102765 (+) True G396005
XR_004577482.1 other downstream 1387212 13246937 ~ 13292141 (+) True zcchc7
TU470464 other downstream 1588150 13447875 ~ 13453718 (+) False klf3
TU470565 other downstream 1866919 13726644 ~ 13775822 (+) False G396887
XR_004577493.1 other downstream 1999944 13859669 ~ 13861258 (+) True LOC117596355

Expression Profile