RNA id: XM_026942898.2


Basic Information

Item Value
RNA id XM_026942898.2
length 973
RNA type mRNA
GC content 0.47
exon number 2
gene id fgfbp2b
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 11409200 ~ 11411027 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAACGCTTCTTTCGAGTACTTTATCCAGCCCTCCACCCATCATGAGAGCCACGTTCCAAGTTGCTCTCCTGCTAGCGTGCTGCATTTGGGCCATAATCACTCAGGCTCAGAGTAGCAATCAGGGTAACAGCATTCACAGCAATCCAGGTGAAATAACTGGCAATGATGGAACTGGAAGGACCGAGCCAATCCGTTTCAGCAACAAAGCCAAAGACGATTGTGTAATGGTCGTATCGAGCCACCGGAACTTCACAAAACTGCGCGTTTCCTGTAAAAGCAAGGGCAAGTCGTATTGGTGTGATTACCTGGGCAAGCCAAACCTGTGCCGGGCCTACAGCAACAACCCACGCCGCTATTTTACCCAGATCATGTGGGAGATGCGCAAATTACAGAATTCCTGCCAGGGCCTCCGCGCATATAAAGCCCTCATGTGCCGCTCTGCAACAGATGAAGCACAGATGGTCTTCCACGCATCCTGGCCCAAAATTCCAAAACAGCAGCAGCCTGGCAAGGCTGGCCCTACGCCCAAGTCGCCGAAGCCACAGCAGCCTGCAAAAGAAGGCTCCAAACTGGTTAAGAATCCTGCTCTCAAACCTATTCAGCCTCAGAAACCTGTTAAAACCACCACACAGAGCCCCACAGAGACACCCAACAATTGGGCAGACAAAGTGGCAGAGGAGCACTGTTGGAAGAGCATGCAGGGTGTCTGTTCCTTCTTCATCAGCTGGTTCCAGTGATAAGGAGCTTTCACATGCAGATCCACTGCAGTTTAGGGGACTTTTGGATCAAATTTGGATGCAGCGTGCAATAAAATGACAAGCAGAAGAAGATGGCCATGAAGCAGAAATTACTGTACTGCTATGATATATGATAGAGATCTACACCTGTTTATATATCTACAGTAAATTGTTACGAAACCTCTAatcttttcttacttttttttatattggaaaagaaaatgatgtaaattt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468936 lncRNA upstream 144031 11261525 ~ 11265169 (+) False smim18
TU468965 lncRNA upstream 189135 11219854 ~ 11220065 (+) True G395568
TU468850 lncRNA upstream 433572 10975416 ~ 10975628 (+) True G395474
XR_003404505.2 lncRNA upstream 531307 10876855 ~ 10877893 (+) True LOC113544427
TU468807 lncRNA upstream 597478 10810534 ~ 10811722 (+) True G395437
TU469224 lncRNA downstream 105 11411132 ~ 11412521 (+) True G395818
TU469256 lncRNA downstream 32618 11443645 ~ 11443866 (+) True G395838
TU469258 lncRNA downstream 138442 11549469 ~ 11552542 (+) False ptpn9b
TU469281 lncRNA downstream 245563 11656590 ~ 11660349 (+) True G395863
TU469368 lncRNA downstream 357878 11768905 ~ 11781667 (+) True G395934
XM_034301396.1 mRNA upstream 5926 11352186 ~ 11403274 (+) False prom1b
XM_034301395.1 mRNA upstream 5926 11352187 ~ 11403274 (+) False prom1b
XM_034301399.1 mRNA upstream 5926 11352187 ~ 11403274 (+) False prom1b
XM_034301398.1 mRNA upstream 5926 11352187 ~ 11403274 (+) False prom1b
XM_034301402.1 mRNA upstream 5926 11352187 ~ 11403274 (+) False prom1b
XM_026943193.2 mRNA downstream 5890 11416917 ~ 11418647 (+) True fgfbp1b
XM_026942912.2 mRNA downstream 34115 11445142 ~ 11448947 (+) True uchl1
XM_034301155.1 mRNA downstream 39405 11450432 ~ 11510916 (+) True limch1a
XM_034301151.1 mRNA downstream 39409 11450436 ~ 11510916 (+) False limch1a
XM_034301150.1 mRNA downstream 39409 11450436 ~ 11510916 (+) False limch1a
XR_004577528.1 other upstream 5926 11352188 ~ 11403274 (+) False prom1b
XR_004577527.1 other upstream 6389 11352187 ~ 11402811 (+) False prom1b
TU468825 other upstream 503805 10897958 ~ 10905395 (+) False smim14
TU468733 other upstream 747497 10660946 ~ 10661703 (+) True G395365
TU468586 other upstream 892831 10506590 ~ 10516369 (+) True G395242
trnai-aau_21 other downstream 368657 11779684 ~ 11779757 (+) True trnai-aau_21
trnai-aau_22 other downstream 369443 11780470 ~ 11780543 (+) True trnai-aau_22
trnai-aau_23 other downstream 371363 11782390 ~ 11782463 (+) True trnai-aau_23
trnai-aau_24 other downstream 371663 11782690 ~ 11782763 (+) True trnai-aau_24
trnai-aau_25 other downstream 372782 11783809 ~ 11783882 (+) True trnai-aau_25

Expression Profile