G407971


Basic Information

Item Value
gene id G407971
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 4283872 ~ 4285837 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU484314
ATACAGCTGTAAACGCAGGAAATTCTGCATGTTATAAATACAGCTGGAAATACTACACAAGGAATACCGAATAAGAAACACTGCATCAAATATATGGCATCCTGGAAAGACACCTGTAAAATACTCCATGTTAAATACTACATGTTGTaaaaacagctggaaatactACACAAGAAATTCTACATGTTTCAAATACAGCTGGAAATACTACACAAGGAATACTACATGTTGTaaaaacagctggaaatactACACAAGGAATACTACATGTTGTaaaaacagctggaaatactACACAGGGAATACTACATGTTGTAAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU484314 True 322 lncRNA 0.34 2 4283872 4285837

Neighbor

gene id symbol gene type direction distance location
ttc13 ttc13 coding upstream 6709 4259199 ~ 4277163 (+)
fam89a fam89a coding upstream 31283 4247742 ~ 4252589 (+)
LOC113529367 sprtn coding upstream 39261 4241184 ~ 4244611 (+)
c30h1orf131 NA coding upstream 75890 4204070 ~ 4207982 (+)
LOC113529295 LOC108275270,LOC103026919,LOC106607809,LOC103357708,LOC100700775 coding upstream 118962 4006743 ~ 4164910 (+)
rps6kc1 rps6kc1 coding downstream 9487 4295324 ~ 4330997 (+)
LOC113529159 LOC108256151,LOC108441115,LOC103022569,LOC105908325 coding downstream 122644 4408481 ~ 4438553 (+)
smyd2b smyd2 coding downstream 186807 4472644 ~ 4486271 (+)
kcnk2b kcnk2,LOC107680301,LOC107731508,LOC107554930,LOC107660545 coding downstream 285717 4571554 ~ 4600857 (+)
LOC113528978 LOC108262032 coding downstream 361409 4647246 ~ 4653998 (+)
G407959 NA non-coding upstream 29965 4252893 ~ 4253907 (+)
LOC117596607 LOC108261645 non-coding upstream 412011 3870959 ~ 3871861 (+)
G407506 NA non-coding upstream 540206 3743413 ~ 3743666 (+)
G407499 LOC108254877 non-coding upstream 558612 3722887 ~ 3725260 (+)
G407463 NA non-coding upstream 692406 3587442 ~ 3591466 (+)
G407962 NA non-coding downstream 6475 4292312 ~ 4293015 (+)
G408057 NA non-coding downstream 120520 4406357 ~ 4406609 (+)
LOC117596517 NA non-coding downstream 380849 4666686 ~ 4668701 (+)
LOC117596549 LOC108261722 non-coding downstream 383027 4668864 ~ 4679846 (+)
LOC117596619 NA non-coding downstream 875834 5161671 ~ 5173388 (+)
LOC117596542 LOC108254905,LOC108254838,LOC108261645,LOC108261364 other upstream 349637 3869287 ~ 3934235 (+)
LOC113528760 LOC108254838,LOC108261645,LOC108254905,LOC108261364 other upstream 420392 3811890 ~ 3863480 (+)
tab2 tab2 other upstream 533625 3672852 ~ 3750247 (+)
cdk19 cdk19,LOC108254892,LOC107653155,LOC107660514 other upstream 618023 3592143 ~ 3665849 (+)
G407395 LOC108257771,LOC108257788,LOC108257640,LOC108257606,LOC108257613,LOC108275265,LOC108257518,LOC108257667,LOC108261240 other upstream 721061 3557397 ~ 3562811 (+)
LOC113529331 NA other downstream 370127 4655964 ~ 4659695 (+)
epha7 epha7 other downstream 652661 4938498 ~ 5016462 (+)
map3k7 map3k7 other downstream 1036809 5322646 ~ 5344062 (+)
lyrm2 lyrm2 other downstream 1447823 5733660 ~ 5736263 (+)
LOC117596576 LOC108256778 other downstream 1962224 6248061 ~ 6309253 (+)

Expression


Co-expression Network