LOC117596619


Basic Information

Item Value
gene id LOC117596619
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 5161671 ~ 5173388 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577679.1
ggatGCATCATTGGAGTTACAAATTTTGTTCCAGTAAGATAATTTGTACCAAAACAAGCATTTAAGGATGAGGTGAAAAGAGAGATTCTGTGGTTAGATGACTGGCTCCTCCTGGAATTTTACACTCCCTGCATCTCTGAGGTCGAACAATGAGCCAGTTGTGATGGATCCTCTGCTGTGACAAGAGACTGTTGAATGTGACAAGAGTCGAAGCGGACATTCTCTGCGAAAGCTAATCCTCTGGAGGAATGAGGTCTGACACAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577679.1 True 266 lncRNA 0.44 3 5161671 5173388

Neighbor

gene id symbol gene type direction distance location
LOC113528767 LOC108256873 coding upstream 463747 4690246 ~ 4697924 (+)
LOC113529399 NA coding upstream 473302 4684720 ~ 4688369 (+)
LOC113528978 LOC108262032 coding upstream 507673 4647246 ~ 4653998 (+)
kcnk2b kcnk2,LOC107680301,LOC107731508,LOC107554930,LOC107660545 coding upstream 560814 4571554 ~ 4600857 (+)
smyd2b smyd2 coding upstream 675400 4472644 ~ 4486271 (+)
bach2b bach2 coding downstream 192454 5365842 ~ 5474398 (+)
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107665348,LOC107683937 coding downstream 323779 5497167 ~ 5546607 (+)
katna1 katna1,LOC107755263,LOC107683938,LOC105902230,LOC107737259,LOC107665349 coding downstream 375235 5548623 ~ 5557518 (+)
LOC113529080 NA coding downstream 416469 5589857 ~ 5603470 (+)
lrp11 lrp11,LOC103399213 coding downstream 510688 5684076 ~ 5694444 (+)
LOC117596549 LOC108261722 non-coding upstream 481825 4668864 ~ 4679846 (+)
LOC117596517 NA non-coding upstream 492970 4666686 ~ 4668701 (+)
G408057 NA non-coding upstream 755062 4406357 ~ 4406609 (+)
G407962 NA non-coding upstream 868656 4292312 ~ 4293015 (+)
G407971 NA non-coding upstream 875834 4283872 ~ 4285837 (+)
LOC117596620 NA non-coding downstream 32191 5205579 ~ 5210160 (+)
LOC113529394 NA non-coding downstream 50293 5223681 ~ 5243675 (+)
G408364 NA non-coding downstream 182750 5356138 ~ 5375068 (+)
G408369 NA non-coding downstream 202668 5376056 ~ 5377934 (+)
G408376 NA non-coding downstream 228543 5401931 ~ 5402285 (+)
epha7 epha7 other upstream 145209 4938498 ~ 5016462 (+)
LOC113529331 NA other upstream 501976 4655964 ~ 4659695 (+)
LOC117596542 LOC108254905,LOC108254838,LOC108261645,LOC108261364 other upstream 1227436 3869287 ~ 3934235 (+)
LOC113528760 LOC108254838,LOC108261645,LOC108254905,LOC108261364 other upstream 1298191 3811890 ~ 3863480 (+)
tab2 tab2 other upstream 1411424 3672852 ~ 3750247 (+)
map3k7 map3k7 other downstream 149258 5322646 ~ 5344062 (+)
lyrm2 lyrm2 other downstream 560272 5733660 ~ 5736263 (+)
LOC117596576 LOC108256778 other downstream 1074673 6248061 ~ 6309253 (+)
LOC117596600 NA other downstream 1098644 6272032 ~ 6276665 (+)
G408893 LOC108261158,LOC108256778 other downstream 1197118 6370506 ~ 6795220 (+)

Expression


Co-expression Network