LOC113528767 (LOC108256873)


Basic Information

Item Value
gene id LOC113528767
gene name LOC108256873
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 4690246 ~ 4697924 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917469.2
TGAGGGCTGGTTAAGTTTCAGTTTTGTTTCCTCACAGGCTTGCACTCACTGTCTGTGGCGCGCTTTCTTTACAAGCCTGCTATTTGTATTCTTCTCTGAATAATAGCGTTCTCTTATGGCTTCCATCGTGTCTTCCCTGGACAGTGAGAAGGAGCTGAGGCTGCAGAGGTTTTTCTCCAGTCCTGTTCGTTTTCATCTTCTGTACAAGAGCAGTCATCATGGAGCCACCGTCAGTCAGCTCCTCTCCAGTTTCGACACATCTGGCAAATTTTTACTTGCAGTGTTTCTGCAGTCAGGGTCAGTCAGAGGAGCTTTCATGAGTAAATCCCTGAAATATGGATCTGAGTTCTCCGACACTGAGGCATTTGTGTTTGAAATGGATGAACACAGTGCCGAACAGTTCCTGGTGATAAACCCAGCCAAAGCTGTCGAGGTTTCAAACATTCAAAACACTGGGTACCGCAAAGGTTTGCACGCTACAAACCTGCAGACTGCAAGTATTTCTTTTGGAAACTGCATTACCTTACACTCTGATAACAGCCGCATGTATGTGAGCTTCTGCACAGATGTGACTTATGGTACAACATGGCCGCAGGAGAGCAACATTTGCTGTGTGGACGTGGAGCTGCACCGTGTCCAAgatgtGGTTAGTTTTTTACCTACTCCTTGGAGAGAAGTGTCCTGGACAGATACGACAAGGGAAAGCCTAAGGCAGGAATTTGTCTCTTACAAGCTGCCGTCGAAGTATCCGGTGTCACGggtgaaggttttgcttttggGCCCTGTGAGTTCTGGGAAGTCCTGCTTCATCAACTCCATCAGATCCACCATGTACAAGCGGATTGTTCATCTGCCCAACGTCGGCACAGCAGTAAACGGGTTCACCAAGAAGCTGAATATCTATAATATCCTTGGAGAGAAAGGAGGTTCTCCCACTGTTTTGAGTCTCTTTGATGTGATGGCAATAGGAGATGATGACTCTACTGGTCTCTCTTTCTCCGATGCACTGGCTGTCATCAAAGGCCACGTCCCAAAAGGATACAAGTTCCAGCCTGATGTTCCAGTCACTGATGCAGTAAGTGGCTACAAAGCAAATCCTTCCCTAAATGAGCAGGTTCACTGCGTCCTCTTCGTGCTTGATGCCTTCAAATTGACATCATACCCCAGCAGCCTGAAGTCCACACTTAGGAAGCTGAACACCACCATATCAGACCTGGGAATCCCTCAGCTGATTTTGCTCACTCATGTGGACCAGGTGTGTCCAGCAGTACAGGAGGACTTGAAGTATGTCTACTCCAGTCGAACTGTGCAGGATAAGATGCAGAAAGCAGCCGAGTTGGTGGGATTGCCATTGTCCTACGTGCTGCCAGTGAAAAACTACATTGCCCAGCTGACAGTGGACTACAAGACTGACATCCTGCTCCTGAGTGTGGTTATGTCCATCCTACAGTCTGTGGATGACACACTCGAGGACCAGTATCCCTCTACACCAACTTGTAGCCCTGTAGACTTGaatcaggaggaaaaaaatgtggtcAGCATATAGGCTTTTATGTCGATAAGATACAGTAAACAGTTAACAATACATATAtcaacatttcattcatttatatcacttatatataattatgtattttattttatagtctACAATAAGTCCTGGCATTGTTGAAAAATTTACATTGTGGGAACATAACTGTATTCATTACTGAattcatgatttttattttgacatataggtttttttttgttaccttCCTGGTCCTTTCTTCAATCATTTATTGGTTTGTTTCACTAATATGCTCATCTGCTTCCTATTAACTCTCATTTGTCTCCGTGTATATATACCAGCTCATGTTCCAGTGTTCTTTGTGAGTATTTGATGGCAAATACCATTTCATTTTGATTTCgaaagattatttttttctttttgattgtTGTGATAAActgtgctaacactggagacctcttccataaatgttaaataaacataat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917469.2 True 1995 mRNA 0.43 7 4690246 4697924

Neighbor

gene id symbol gene type direction distance location
LOC113529399 NA coding upstream 1877 4684720 ~ 4688369 (+)
LOC113528978 LOC108262032 coding upstream 36248 4647246 ~ 4653998 (+)
kcnk2b kcnk2,LOC107680301,LOC107731508,LOC107554930,LOC107660545 coding upstream 89389 4571554 ~ 4600857 (+)
smyd2b smyd2 coding upstream 203975 4472644 ~ 4486271 (+)
LOC113529159 LOC108256151,LOC108441115,LOC103022569,LOC105908325 coding upstream 251693 4408481 ~ 4438553 (+)
bach2b bach2 coding downstream 667918 5365842 ~ 5474398 (+)
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107665348,LOC107683937 coding downstream 799243 5497167 ~ 5546607 (+)
katna1 katna1,LOC107755263,LOC107683938,LOC105902230,LOC107737259,LOC107665349 coding downstream 850699 5548623 ~ 5557518 (+)
LOC113529080 NA coding downstream 891933 5589857 ~ 5603470 (+)
lrp11 lrp11,LOC103399213 coding downstream 986152 5684076 ~ 5694444 (+)
LOC117596549 LOC108261722 non-coding upstream 10400 4668864 ~ 4679846 (+)
LOC117596517 NA non-coding upstream 21545 4666686 ~ 4668701 (+)
G408057 NA non-coding upstream 283637 4406357 ~ 4406609 (+)
G407962 NA non-coding upstream 397231 4292312 ~ 4293015 (+)
G407971 NA non-coding upstream 404409 4283872 ~ 4285837 (+)
LOC117596619 NA non-coding downstream 463747 5161671 ~ 5173388 (+)
LOC117596620 NA non-coding downstream 507655 5205579 ~ 5210160 (+)
LOC113529394 NA non-coding downstream 525757 5223681 ~ 5243675 (+)
G408364 NA non-coding downstream 658214 5356138 ~ 5375068 (+)
G408369 NA non-coding downstream 678132 5376056 ~ 5377934 (+)
LOC113529331 NA other upstream 30551 4655964 ~ 4659695 (+)
LOC117596542 LOC108254905,LOC108254838,LOC108261645,LOC108261364 other upstream 756011 3869287 ~ 3934235 (+)
LOC113528760 LOC108254838,LOC108261645,LOC108254905,LOC108261364 other upstream 826766 3811890 ~ 3863480 (+)
tab2 tab2 other upstream 939999 3672852 ~ 3750247 (+)
cdk19 cdk19,LOC108254892,LOC107653155,LOC107660514 other upstream 1024397 3592143 ~ 3665849 (+)
epha7 epha7 other downstream 240574 4938498 ~ 5016462 (+)
map3k7 map3k7 other downstream 624722 5322646 ~ 5344062 (+)
lyrm2 lyrm2 other downstream 1035736 5733660 ~ 5736263 (+)
LOC117596576 LOC108256778 other downstream 1550137 6248061 ~ 6309253 (+)
LOC117596600 NA other downstream 1574108 6272032 ~ 6276665 (+)

Expression


Co-expression Network