katna1 (katna1,LOC107755263,LOC107683938,LOC105902230,LOC107737259,LOC107665349)


Basic Information

Item Value
gene id katna1
gene name katna1,LOC107755263,LOC107683938,LOC105902230,LOC107737259,LOC107665349
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 5548623 ~ 5557518 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917866.2
TCCGACGTGTTTACAGAACTTGAGCGCTGCTGCGCGAGTAGCAGCCTAGCTGGAGGAAATCAGTCTCTAAAGAAAGTGGAGaaagtgtttctgtttttccgCGCTAACAGATTAAAACAGAGGTTATGCGTTGTTTTGGGAGATTTTCAGCAACAACCTGACAAGAATGAGTTTGTTGGAAATCAGTGAGAACGTGAAGCTGGCCAGAGAGTACGCCTTGCTGGGGAACTACAGCTCAGCCGTGGTCTGCTATCAGGGGGTGCTGGAGCAAATCAGGAAGTACCTGCTCTCTGTGCGAGACTCGTCTGTGCAGCAAAAATGGCAGCAGGTTTGGCAGGAGATAAACGAGGAGAACAAGCACGTGAGGGACATCATGACCACGCTGGAGAGCTTCCAGCTGGACAACGCCCCTTCCAAGCCCAGCGGTTTCAGCCAAGAGAGCGACATCATGCCTGTTCAGGTCGAACATAgATCGTCTCCGTGTGCAGTACGCAAGGCCCCGGTGCCGTATAAAGACGGTAAAGCTCACGGCAGCAGATTGAGCGCTGGGCCGCGCTCCCAACACCGACAATCGCCACGCGTCGCTAACGGCGACCGAGGAAAACCGCCGAAGggcaaagagaagaaagaaaacacaccgAAGCAGAAAGACGACAAGAACAAACCTGAGGCCTCTGAGCCGGAGGTGAAGAAGTTCgacagaggaggagaagacAAAGACCTGATTGAGACGTTGGAGCGAGATATCATCTCACAGAACCCCAACGTGAAGTGGGATGACATTGCTGATCTGGAGGAAGCGAAGAAGCTCCTGAAGGAGGCGGTGGTTCTGCCCATGTGGATGCCCGAGTTCTTTAAGGGAATCAGGCGACCGTGGAAGGGCGTGCTGATGGTCGGCCCCCCAGGTACGGGCAAAACTCTGCTTGCGAAAGCTGTAGCGACAGAATGCCGGACCACCTTCTTCAACGTCTCCTCCTCTACACTCACCTCCAAATACAGAGGGGAGTCGGAGAAACTGGTGCGCCTGCTGTTCGAAATGGCAAGGTTCTACGCTCCCACAACCATCTTCATCGACGAGATCGACTCCATGTGCAGCCGCAGGGGAACTTCAGAAGAGCATGAAGCAAGCAGACGAGTCAAAGCAGAACTTCTGGTGCAAATGGATGGTGTTGGAGGACCGTCTGACAATGACCCTTCTAAAATGGTGATGGTCCTGGCAGCCACTAATTTCCCCTGGGACATCGATGAAGCTCTGAGACGCCGACTAGAGAAAAGGATCTACATACCTCTGCCCACAGCTAAGGGCCGGGCCGATCTGCTGAAGATAAACCTGAAGGAGTTGGAGCTGGCTAATGATGTGGAGCTGGATAAGATCGCAGAGCAGATGGAGGGATATTCAGGTGCTGACATCACCAACGTCTGCAGAGATGCTTCTCTGATGGCTATGAGGCGACGAATCGAAGGTTTGACCCCGGAGGAGATCCGTAACATTTCCCGAGACGAGATGCACATGCCCACAACCATGGAGGATTTCCAGACGGCTCTGAAGAAAGTGTCTAAATCCGTCTCTGCCGCTGACCTGGAGAAATACGAGAAGTGGATCGCAGAGTTCGGCTCCTGTTGACCCGTTCTAATGCCATCACCTGGGGTACAATTCAGAACGTCCTTAAAGGGGCAGTTTGTAACTTTTAGAGCCTAGAACTTTTCTGCTCCCTCTGAGGGGAACTGCAATGAAAATGCCAAGCCTTACCATTAGACTGAATTGGGCAGATCTGTTCTAGATGGGGGTGGAgttaatttctgggccagaaaaaatataaacaggagAAACTAGAAGAAATTGCAATATTGTAAATTTTTCCaatgtatatactgtgtattaCAGGTCTctctaaaaaaattacaaactgcacctttacaTTATTTCAGCACTTTGAAATACAAATGGCTGATCTCCAcctgtggtggaaaaacagTCAGGTCACTCAGTAAGGGTTCTTTATTAGTGATCTGAGAGGATCCTGTGGCAGGACAGGATCCGTTACGTTCTGTTgaatcaatattaaaaaaaaaaaaaaaaagttgattttaGCACTTAGTGTCCCAGGAAGGTGCTTC

Function

symbol description
katna1 Predicted to enable ATP hydrolysis activity and microtubule-severing ATPase activity. Acts upstream of or within axon extension and cytoplasmic microtubule organization. Predicted to be located in cytoplasm; midbody; and mitotic spindle pole. Predicted to be active in microtubule cytoskeleton and nucleus. Orthologous to human KATNA1 (katanin catalytic subunit A1).

NR:

description
katanin p60 ATPase-containing subunit A1 isoform X2

GO:

id name namespace
GO:0051013 microtubule severing biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0048675 axon extension biological_process
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0030496 midbody cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0008568 microtubule-severing ATPase activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K07767 KATNA1; katanin p60 ATPase-containing subunit A1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917866.2 True 2118 mRNA 0.50 11 5548623 5557518

Neighbor

gene id symbol gene type direction distance location
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107665348,LOC107683937 coding upstream 2016 5497167 ~ 5546607 (+)
bach2b bach2 coding upstream 74225 5365842 ~ 5474398 (+)
LOC113528767 LOC108256873 coding upstream 850699 4690246 ~ 4697924 (+)
LOC113529399 NA coding upstream 860254 4684720 ~ 4688369 (+)
LOC113528978 LOC108262032 coding upstream 894625 4647246 ~ 4653998 (+)
LOC113529080 NA coding downstream 32339 5589857 ~ 5603470 (+)
lrp11 lrp11,LOC103399213 coding downstream 126558 5684076 ~ 5694444 (+)
nup43 nup43,LOC106571302 coding downstream 155938 5713456 ~ 5719651 (+)
lats1 lats1,LOC107660506,LOC107550539,LOC107554921,LOC107678322 coding downstream 162396 5719914 ~ 5730099 (+)
trnag-gcc_30 NA coding downstream 185274 5742792 ~ 5742862 (+)
G408378 NA non-coding upstream 142572 5403467 ~ 5406051 (+)
G408376 NA non-coding upstream 146338 5401931 ~ 5402285 (+)
G408369 NA non-coding upstream 170689 5376056 ~ 5377934 (+)
G408364 NA non-coding upstream 173555 5356138 ~ 5375068 (+)
LOC113529394 NA non-coding upstream 304948 5223681 ~ 5243675 (+)
G408531 NA non-coding downstream 47853 5605371 ~ 5605584 (+)
G408711 NA non-coding downstream 331995 5889513 ~ 5889799 (+)
G408805 NA non-coding downstream 491048 6048566 ~ 6066515 (+)
G408821 NA non-coding downstream 510411 6067929 ~ 6068392 (+)
G408823 NA non-coding downstream 513068 6070586 ~ 6070797 (+)
map3k7 map3k7 other upstream 204561 5322646 ~ 5344062 (+)
epha7 epha7 other upstream 532161 4938498 ~ 5016462 (+)
LOC113529331 NA other upstream 888928 4655964 ~ 4659695 (+)
LOC117596542 LOC108254905,LOC108254838,LOC108261645,LOC108261364 other upstream 1614388 3869287 ~ 3934235 (+)
LOC113528760 LOC108254838,LOC108261645,LOC108254905,LOC108261364 other upstream 1685143 3811890 ~ 3863480 (+)
lyrm2 lyrm2 other downstream 176142 5733660 ~ 5736263 (+)
LOC117596576 LOC108256778 other downstream 690543 6248061 ~ 6309253 (+)
LOC117596600 NA other downstream 714514 6272032 ~ 6276665 (+)
G408893 LOC108261158,LOC108256778 other downstream 812988 6370506 ~ 6795220 (+)
LOC117596579 NA other downstream 837338 6394856 ~ 6437763 (+)

Expression


Co-expression Network