G408531


Basic Information

Item Value
gene id G408531
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 5605371 ~ 5605584 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU484955
GtttgctttgggtcattgtccataaGTATTGTGAAGTgccgtccaatgagttttgaagcCTTTGGCTGAATGTGCttttatcagcagtcacatcatcaataaatacaagggaagcAGTTACATGGTACATAAGGTGACATGGTATGTTTGGGATTATgtgcagttccttcccttctccatactcttctcttcccatcattctggtacaagttga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU484955 True 214 lncRNA 0.41 1 5605371 5605584

Neighbor

gene id symbol gene type direction distance location
LOC113529080 NA coding upstream 1901 5589857 ~ 5603470 (+)
katna1 katna1,LOC107755263,LOC107683938,LOC105902230,LOC107737259,LOC107665349 coding upstream 47853 5548623 ~ 5557518 (+)
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107665348,LOC107683937 coding upstream 58764 5497167 ~ 5546607 (+)
bach2b bach2 coding upstream 130973 5365842 ~ 5474398 (+)
LOC113528767 LOC108256873 coding upstream 907447 4690246 ~ 4697924 (+)
lrp11 lrp11,LOC103399213 coding downstream 78492 5684076 ~ 5694444 (+)
nup43 nup43,LOC106571302 coding downstream 107872 5713456 ~ 5719651 (+)
lats1 lats1,LOC107660506,LOC107550539,LOC107554921,LOC107678322 coding downstream 114330 5719914 ~ 5730099 (+)
trnag-gcc_30 NA coding downstream 137208 5742792 ~ 5742862 (+)
ube2j1 ube2j1 coding downstream 172839 5778423 ~ 5808281 (+)
G408378 NA non-coding upstream 199320 5403467 ~ 5406051 (+)
G408376 NA non-coding upstream 203086 5401931 ~ 5402285 (+)
G408369 NA non-coding upstream 227437 5376056 ~ 5377934 (+)
G408364 NA non-coding upstream 230303 5356138 ~ 5375068 (+)
LOC113529394 NA non-coding upstream 361696 5223681 ~ 5243675 (+)
G408711 NA non-coding downstream 283929 5889513 ~ 5889799 (+)
G408805 NA non-coding downstream 442982 6048566 ~ 6066515 (+)
G408821 NA non-coding downstream 462345 6067929 ~ 6068392 (+)
G408823 NA non-coding downstream 465002 6070586 ~ 6070797 (+)
G408824 NA non-coding downstream 466018 6071602 ~ 6072669 (+)
map3k7 map3k7 other upstream 261309 5322646 ~ 5344062 (+)
epha7 epha7 other upstream 588909 4938498 ~ 5016462 (+)
LOC113529331 NA other upstream 945676 4655964 ~ 4659695 (+)
LOC117596542 LOC108254905,LOC108254838,LOC108261645,LOC108261364 other upstream 1671136 3869287 ~ 3934235 (+)
LOC113528760 LOC108254838,LOC108261645,LOC108254905,LOC108261364 other upstream 1741891 3811890 ~ 3863480 (+)
lyrm2 lyrm2 other downstream 128076 5733660 ~ 5736263 (+)
LOC117596576 LOC108256778 other downstream 642477 6248061 ~ 6309253 (+)
LOC117596600 NA other downstream 666448 6272032 ~ 6276665 (+)
G408893 LOC108261158,LOC108256778 other downstream 764922 6370506 ~ 6795220 (+)
LOC117596579 NA other downstream 789272 6394856 ~ 6437763 (+)

Expression


Co-expression Network