LOC117596579


Basic Information

Item Value
gene id LOC117596579
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 6394856 ~ 6437763 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU485416
gaggaaaacagacacaacacctccatcagaacagcctcagagtaaaacaacaaactctccacctgcatcatcctcaacaacactggaagtttttggCATTATGGCGGTTTTACTGTTGGTGATACCCGGTGtagtggcatttatttgttggaGATGCagagGAGGAAGATGTGGAAAGAACATGATTACTGAAGGACGTCCA
>XM_034302066.1
TCAAAGCTTTTGCCACAGTAAgggcaaaacatttcaatttgtgaatgttttcaatttgtctggaaaatacttccatagtattcagtagattgtgagtttttgtatgtttgtttctgtaggctgtgctctctctgctgATAAAAATCAGGTAGTGATCACACAACAAGGtgcttcagtgctgttaccctgctcctgctctgacctgcacaccaaacctcagaCATTCACCTGGGAGAGCTACAGAACAGGACgtctgacagaaatgttaaatgatgaacactaccgtggcagacttcagctgtttaataacatttctcctgctaatctgtctctgctcatatctgacctgagagaagaggatcaggGAGACTACAGGTGCAGAACTGAGAAGGAATACAGAGACATGTGGCtttatgttaaagtggGGAGAAGCGAAACTTCAACACAgtcgaggaaaacagacacaacacctccatcagaacagcctcagagtaaaacaacaaactctccacctgcatcatcctcaacaacactggaagtttttggCATTATGGCGGTTTTACTGTTGGTGATACCCGGTGtagtggcatttatttgttggaGATGCagagGAGGAAGATGTGGAAAGAACATGATTACTGAAGGACGTCCAGACTCTAAAGGAAAGCAGGAGGATCGGactgtacctgatgatatttactgtaatataacCCACATTAACACAGCCAGAGCAGAACGGCTCCAGATCAGCGTTGGAGAGACATCTGAATATGCCAACATTATAACTAATCCAAAgtaaatatatgtacatttatatatgtattttttttttgtacattaaaaAGCAAATTCAGCAGATTTATCCAGAGTattgtgttacatttactttgttagct
>XM_034302067.1
tacttccatagtattcagtagattgtgagattttgtgtgtttgtttctgtaggctgtgctctctctggtgGTAAGAATCAGGAAGGAATAGAAGGACACACTGGGggttcagtgctgttaccctgctcctgctctgacctgcacaccaaacctcagaaattCACCTGGATGAGCTACAGAACAGGACgtctgacagaaatgttaaatgatgaacgctaccgtggcagacttcagctgtttaataacatttctcctgctaatctgtctctgctcatatctgacctgagagaaaAGGATCACGGACTCTACAagtgcagcactgagaaggaacTCAGAGACATCAGGCtttatgttaaagTGGGGAGAAGCGAAACTTCAACACAgtcgaggaaaacagacacaacacctccatcagaacagcctcagagtaaaacaacaaactctccacctgcatcatcctcaacaacactggaagttttcGGCATCGTGGCGGTTTTACTGTTGGCGATACCCGGTGtagtggcatttatttgttggCGACGCAGAGGAGGAAGATGTGGAAAGAACATGATTACTGAAGGACGTCCAGACTCTAAAGGAAAGCAGGAGGATCGGactgtacctgatgatatttactgtaatataacCCACATTAACACAGCCAGAGCAGAACGGCTCCAGATCAGCGTTGGAGAGACATCTGAATATGCCAACATTATAACTAATCCAAAgtaaatatatgtacatttatatatgtattttttttttgtacattaaaaAGCAAATTCAGCAGATTTATCCAGAGTattgtgttacatttactttgttagct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU485416 False 202 lncRNA 0.45 3 6396456 6437123
XM_034302066.1 True 896 mRNA 0.41 5 6394856 6437763
XM_034302067.1 False 832 mRNA 0.42 5 6432886 6437763

Neighbor

gene id symbol gene type direction distance location
LOC117596543 LOC108256778 coding upstream 10632 6380073 ~ 6384224 (+)
LOC117596580 NA coding upstream 26073 6363164 ~ 6368783 (+)
ivns1abpa ivns1abp,ivns1abpa,LOC108256770,LOC107732388,LOC107553504,LOC107726450 coding upstream 346334 6034549 ~ 6048522 (+)
arpc5b arpc5,arpc5b,LOC103045524,LOC107698380,LOC107599090,LOC107732423,LOC104921830 coding upstream 484961 5903579 ~ 5909895 (+)
gabrr1 gabrr1,LOC108256869,LOC108427508,LOC107742995,LOC107680312,LOC107392250 coding upstream 531240 5848012 ~ 5863616 (+)
LOC117596544 LOC108261522,LOC108256778 coding downstream 56654 6494417 ~ 6585492 (+)
LOC113529075 LOC108275256,LOC108427497,LOC100690439 coding downstream 994725 7432488 ~ 7497053 (+)
nrl LOC108275247,LOC108427498 coding downstream 1082685 7520448 ~ 7525893 (+)
LOC113528764 LOC108427476,LOC103026240,LOC108274573 coding downstream 1092464 7530227 ~ 7546810 (+)
senp6a senp6 coding downstream 1141502 7579265 ~ 7607340 (+)
G408892 NA non-coding upstream 19274 6374374 ~ 6375582 (+)
LOC117596601 NA non-coding upstream 37677 6317383 ~ 6357179 (+)
G408899 LOC108256778,LOC108261158,LOC108280158 non-coding upstream 39254 6352887 ~ 6355602 (+)
G408888 NA non-coding upstream 41062 6305997 ~ 6353794 (+)
G408889 NA non-coding upstream 56176 6308127 ~ 6338680 (+)
G408923 NA non-coding downstream 86398 6524161 ~ 6697712 (+)
G408894 NA non-coding downstream 89534 6527297 ~ 6531907 (+)
G408937 NA non-coding downstream 201260 6639023 ~ 6670765 (+)
G408940 NA non-coding downstream 209810 6647573 ~ 6648787 (+)
LOC117596596 NA non-coding downstream 357429 6795192 ~ 6796340 (+)
LOC117596576 LOC108256778 other upstream 85603 6248061 ~ 6309253 (+)
LOC117596600 NA other upstream 118191 6272032 ~ 6276665 (+)
lyrm2 lyrm2 other upstream 658593 5733660 ~ 5736263 (+)
map3k7 map3k7 other upstream 1050794 5322646 ~ 5344062 (+)
epha7 epha7 other upstream 1378394 4938498 ~ 5016462 (+)
G408929 NA other downstream 118600 6556363 ~ 6642498 (+)
LOC117596573 LOC108280157 other downstream 175510 6613273 ~ 6739527 (+)
LOC117596581 NA other downstream 195602 6633365 ~ 6654018 (+)
LOC117596594 NA other downstream 327148 6764911 ~ 7071033 (+)
G409600 NA other downstream 1440032 7877795 ~ 7878545 (+)

Expression


Co-expression Network