G408892


Basic Information

Item Value
gene id G408892
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 6374374 ~ 6375582 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU485373
TGTTGCATTTGTGATACACTGCAGCTAGAACACATGAACCACACATGCTTTCACTGAACAGTGATGGAGCCCTCACACCCATGATTCTGGCTCTTAAACAATGTCTAGGGGAGTTTCCATGAACTTTTAACTACAGGTGGGAAGTACATCTGAATACTTTTCATTGACAAGatgtaaacaggaaatgtaGGAATATTCAGTAACACACTTGTTGTCTACTTCACAAGACTTTCCTCCCTGCTTCAGATTACTTTAAGGAAAATTTGGGAGATTTACGTGATGTGTGAGTCCTCAAGGCAATTTCTCAATTCAGTGGTTTAATACTGAGTTGTCTATCAAATTATAACCAACACTTTGCAAGTAGAGAAAGTCGATACACTCTTTTGTGTACATACACAAAAAGGAAATATGACTTTAAAAATGAGTCAGTGTCATATATTTATCCCTTAAATCTCTCTGTGAGTATTTTATCTCTATAGATGTTTAAGCTTTACTTTCCAATTCAGCTAATAGTTTAACCCTTCAACTAGAAACAGACACAGGATAAGaactaaaagaaagaaacaaaacaacaccCAAATAACACTCAATAAAATCCAGCTGAGAGATTTTAAGTCAATTGTTGGAGCTCATATCtgttcaacaacaacaaaaaagtgtaCTCAAACCCTTGGAAAAGTGGCGAGAAGAACCGCTAAGGTCCACGTTTCCTGAGGAGAGGCTTCGGACAAAACTCACTCTCTTTTCTACTGAGTCAAAGTCCCTCTGTTCGCGCGGGAACTTTCTTTTCCTTGTCGTTTCAAGTCAGACTCGAGGAAAACTTTTCCCGGTTCGCCGAACAAGTCCACTCGAACTGGAACAAGAGTACCGTTTGTTCTGGTTCGCTCTGTCTTGCGTTAGCATCTGGGCTTAAGCAAGTCGAATCAAGAAAATAGCGAGATTCGTTGTTCCTCTTCCGCTATTCTGTATCCCTTGCTCCTCTTTCTCTTCACTCCCAAAGAAAACAACTGCCGATACTCTTCACTTCTTCACCCCCTCCCCTGAAAGCAAAAATTCCAAACCctagaaaaatacatttcacagtCCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU485373 True 1089 lncRNA 0.40 2 6374374 6375582

Neighbor

gene id symbol gene type direction distance location
LOC117596580 NA coding upstream 5591 6363164 ~ 6368783 (+)
ivns1abpa ivns1abp,ivns1abpa,LOC108256770,LOC107732388,LOC107553504,LOC107726450 coding upstream 325852 6034549 ~ 6048522 (+)
arpc5b arpc5,arpc5b,LOC103045524,LOC107698380,LOC107599090,LOC107732423,LOC104921830 coding upstream 464479 5903579 ~ 5909895 (+)
gabrr1 gabrr1,LOC108256869,LOC108427508,LOC107742995,LOC107680312,LOC107392250 coding upstream 510758 5848012 ~ 5863616 (+)
gabrr2b LOC108256881,LOC108427479,LOC103361227 coding upstream 539431 5810314 ~ 5834943 (+)
LOC117596543 LOC108256778 coding downstream 4491 6380073 ~ 6384224 (+)
LOC117596544 LOC108261522,LOC108256778 coding downstream 118835 6494417 ~ 6585492 (+)
LOC113529075 LOC108275256,LOC108427497,LOC100690439 coding downstream 1056906 7432488 ~ 7497053 (+)
nrl LOC108275247,LOC108427498 coding downstream 1144866 7520448 ~ 7525893 (+)
LOC113528764 LOC108427476,LOC103026240,LOC108274573 coding downstream 1154645 7530227 ~ 7546810 (+)
LOC117596601 NA non-coding upstream 17195 6317383 ~ 6357179 (+)
G408899 LOC108256778,LOC108261158,LOC108280158 non-coding upstream 18772 6352887 ~ 6355602 (+)
G408888 NA non-coding upstream 20580 6305997 ~ 6353794 (+)
G408889 NA non-coding upstream 35694 6308127 ~ 6338680 (+)
LOC113529309 LOC108280129 non-coding upstream 36028 6337223 ~ 6338346 (+)
G408904 NA non-coding downstream 12938 6388520 ~ 6592040 (+)
G408906 NA non-coding downstream 15613 6391195 ~ 6681409 (+)
G408913 NA non-coding downstream 59415 6434997 ~ 6457685 (+)
G408923 NA non-coding downstream 148579 6524161 ~ 6697712 (+)
G408894 NA non-coding downstream 151715 6527297 ~ 6531907 (+)
LOC117596576 LOC108256778 other upstream 65121 6248061 ~ 6309253 (+)
LOC117596600 NA other upstream 97709 6272032 ~ 6276665 (+)
lyrm2 lyrm2 other upstream 638111 5733660 ~ 5736263 (+)
map3k7 map3k7 other upstream 1030312 5322646 ~ 5344062 (+)
epha7 epha7 other upstream 1357912 4938498 ~ 5016462 (+)
LOC117596579 NA other downstream 19274 6394856 ~ 6437763 (+)
G408929 NA other downstream 180781 6556363 ~ 6642498 (+)
LOC117596573 LOC108280157 other downstream 237691 6613273 ~ 6739527 (+)
LOC117596581 NA other downstream 257783 6633365 ~ 6654018 (+)
LOC117596594 NA other downstream 389329 6764911 ~ 7071033 (+)

Expression


Co-expression Network