G408929


Basic Information

Item Value
gene id G408929
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 6556363 ~ 6642498 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU485443
gACTGGTGTGCGTGTAGaagaatcagtaatgatgaagtgcttgtatcttttgtctgttgtgtttcacgtcgctgcaggctgtgctctctctgctgATTATAATCAGAGAGGAATAGTAGGATACACTGGGggttcagtgctgttaccctgctcctgctctgacctgcacaccaaacctcagaaaCTCACCTGGATTAGGGACAGAAAAGGACGTCagtcagaaatgttaaatgatgaacactaccgtggcagacttcagctgtttaataacatttctcctgctaatctgtctctgctcatatctgacctgagagaagaggatcagggagtctacaggtgcagcactgagaaggaacACAGAACCATCGTGATTACTGTTAAAGtGGGAAGAAGAGAAACTTCCACACAgtcgaggaaaacagacacaacacctccatcagaacagcctcagagtaaaacaacaaactctccacctgca
>TU485444
gACTGGTGTGCGTGTAGaagaatcagtaatgatgaagtgcttgtatcttttgtctgttgtgtttcacgtcgctgcaggtgagtgaagttattttctattttctattacagaaggagagagaatattagccagttcttagttcagctgttttgtgtttagttcatgtgctttctgtccagactgggtttacagtaggccggagttcagccctgttcctgaacaaccaaaccaacactgtaaactgtttatcatttagagttttaattaaCAACAACTTTGCTTACTACAGGATTTTTTCTTGCTGATTAACTTTagtctaaaatgtactgatgaagagaggtgggctaatgaataaggaggattctacagtgagattattttacatccctataatacttacagtgtatgtttttacacatttactgaattac

Function

GO: NA

KEGG:

id description
ko00970 Aminoacyl-tRNA biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU485443 True 478 TUCP 0.46 3 6556363 6563776
TU485444 False 431 lncRNA 0.36 2 6556363 6642498

Neighbor

gene id symbol gene type direction distance location
LOC117596543 LOC108256778 coding upstream 172139 6380073 ~ 6384224 (+)
LOC117596580 NA coding upstream 187580 6363164 ~ 6368783 (+)
ivns1abpa ivns1abp,ivns1abpa,LOC108256770,LOC107732388,LOC107553504,LOC107726450 coding upstream 507841 6034549 ~ 6048522 (+)
arpc5b arpc5,arpc5b,LOC103045524,LOC107698380,LOC107599090,LOC107732423,LOC104921830 coding upstream 646468 5903579 ~ 5909895 (+)
gabrr1 gabrr1,LOC108256869,LOC108427508,LOC107742995,LOC107680312,LOC107392250 coding upstream 692747 5848012 ~ 5863616 (+)
LOC113529075 LOC108275256,LOC108427497,LOC100690439 coding downstream 789990 7432488 ~ 7497053 (+)
nrl LOC108275247,LOC108427498 coding downstream 877950 7520448 ~ 7525893 (+)
LOC113528764 LOC108427476,LOC103026240,LOC108274573 coding downstream 887729 7530227 ~ 7546810 (+)
senp6a senp6 coding downstream 936767 7579265 ~ 7607340 (+)
myo6a myo6 coding downstream 969357 7611855 ~ 7726643 (+)
G408894 NA non-coding upstream 24456 6527297 ~ 6531907 (+)
G408913 NA non-coding upstream 98678 6434997 ~ 6457685 (+)
G408837 NA non-coding upstream 133308 6172128 ~ 6423055 (+)
G408892 NA non-coding upstream 180781 6374374 ~ 6375582 (+)
LOC117596601 NA non-coding upstream 199184 6317383 ~ 6357179 (+)
G408940 NA non-coding downstream 5075 6647573 ~ 6648787 (+)
LOC117596596 NA non-coding downstream 152694 6795192 ~ 6796340 (+)
LOC113529310 NA non-coding downstream 236140 6878638 ~ 6880233 (+)
LOC117596589 NA non-coding downstream 286102 6928600 ~ 6931893 (+)
LOC117596583 NA non-coding downstream 312086 6954584 ~ 7032454 (+)
LOC117596579 NA other upstream 118600 6394856 ~ 6437763 (+)
LOC117596576 LOC108256778 other upstream 247110 6248061 ~ 6309253 (+)
LOC117596600 NA other upstream 279698 6272032 ~ 6276665 (+)
lyrm2 lyrm2 other upstream 820100 5733660 ~ 5736263 (+)
map3k7 map3k7 other upstream 1212301 5322646 ~ 5344062 (+)
LOC117596594 NA other downstream 122413 6764911 ~ 7071033 (+)
G409600 NA other downstream 1235297 7877795 ~ 7878545 (+)
LOC113529148 NA other downstream 2455879 9098377 ~ 9104224 (+)
G410936 snx3 other downstream 3535551 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 3555218 10197716 ~ 10230807 (+)

Expression


Co-expression Network