G408913


Basic Information

Item Value
gene id G408913
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 6434997 ~ 6457685 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU485423
gccaaatccaaaaaaataaataaataattcatttggtaacactttaactatggaaaaataaataaataaataaataaataaaggtaatTGCGACTTTACATCTcacaattctgacttttttctctcactatttAGAGATCCACTTTGACTCAGTACCTGAAATGTGACTAACTTCAGGTAACGAGCGCGCGCTAGCGTCTGGTTGAGTGTTGTTCTTATAGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU485423 True 224 lncRNA 0.33 2 6434997 6457685

Neighbor

gene id symbol gene type direction distance location
LOC117596543 LOC108256778 coding upstream 50773 6380073 ~ 6384224 (+)
LOC117596580 NA coding upstream 66214 6363164 ~ 6368783 (+)
ivns1abpa ivns1abp,ivns1abpa,LOC108256770,LOC107732388,LOC107553504,LOC107726450 coding upstream 386475 6034549 ~ 6048522 (+)
arpc5b arpc5,arpc5b,LOC103045524,LOC107698380,LOC107599090,LOC107732423,LOC104921830 coding upstream 525102 5903579 ~ 5909895 (+)
gabrr1 gabrr1,LOC108256869,LOC108427508,LOC107742995,LOC107680312,LOC107392250 coding upstream 571381 5848012 ~ 5863616 (+)
LOC117596544 LOC108261522,LOC108256778 coding downstream 36732 6494417 ~ 6585492 (+)
LOC113529075 LOC108275256,LOC108427497,LOC100690439 coding downstream 974803 7432488 ~ 7497053 (+)
nrl LOC108275247,LOC108427498 coding downstream 1062763 7520448 ~ 7525893 (+)
LOC113528764 LOC108427476,LOC103026240,LOC108274573 coding downstream 1072542 7530227 ~ 7546810 (+)
senp6a senp6 coding downstream 1121580 7579265 ~ 7607340 (+)
G408837 NA non-coding upstream 11942 6172128 ~ 6423055 (+)
G408892 NA non-coding upstream 59415 6374374 ~ 6375582 (+)
LOC117596601 NA non-coding upstream 77818 6317383 ~ 6357179 (+)
G408899 LOC108256778,LOC108261158,LOC108280158 non-coding upstream 79395 6352887 ~ 6355602 (+)
G408888 NA non-coding upstream 81203 6305997 ~ 6353794 (+)
G408923 NA non-coding downstream 66476 6524161 ~ 6697712 (+)
G408894 NA non-coding downstream 69612 6527297 ~ 6531907 (+)
G408937 NA non-coding downstream 181338 6639023 ~ 6670765 (+)
G408940 NA non-coding downstream 189888 6647573 ~ 6648787 (+)
LOC117596596 NA non-coding downstream 337507 6795192 ~ 6796340 (+)
LOC117596576 LOC108256778 other upstream 125744 6248061 ~ 6309253 (+)
LOC117596600 NA other upstream 158332 6272032 ~ 6276665 (+)
lyrm2 lyrm2 other upstream 698734 5733660 ~ 5736263 (+)
map3k7 map3k7 other upstream 1090935 5322646 ~ 5344062 (+)
epha7 epha7 other upstream 1418535 4938498 ~ 5016462 (+)
G408929 NA other downstream 98678 6556363 ~ 6642498 (+)
LOC117596573 LOC108280157 other downstream 155588 6613273 ~ 6739527 (+)
LOC117596581 NA other downstream 175680 6633365 ~ 6654018 (+)
LOC117596594 NA other downstream 307226 6764911 ~ 7071033 (+)
G409600 NA other downstream 1420110 7877795 ~ 7878545 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G408509 NA non-coding CI01000300 null 1055816 ~ 1066158 (+)