ivns1abpa (ivns1abp,ivns1abpa,LOC108256770,LOC107732388,LOC107553504,LOC107726450)


Basic Information

Item Value
gene id ivns1abpa
gene name ivns1abp,ivns1abpa,LOC108256770,LOC107732388,LOC107553504,LOC107726450
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 6034549 ~ 6048522 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918432.2
CGTCTTTCCCGTCGGAAGCTCGCGCGCTGTCACGTTTATGCTCGCAGGCTCGTGGTTCGTGTGGATACAGGACCCGTGTAGATCCGACCCGTTCGCCGTTACCCGCTTGTCAGACAACTTCGAGTTGAACCCAAATATGTCTACCATCGTCTGCTGTCAAACGGATCAGGTTATAATACACGACCAACCTAGAAAAGGTTTCATTCTATAGCCAACGGGATCCCGAGGACTTGATTACAGTCGCTCTAAGCCTGAGAGTTTGCGTTAGTGCGGCTGCCCGCCCTTCCATTCGCTCTGCGCTAGCTGGTTCCCTGGCATCACCTCTGCCACCTGCTCAGAAGTGAAGGAAAGACCTGGTTGTTAGACCCCCAGCACAACTGTTTCTCCAAGAATTACGGAATTTCTGATTAGGCTTACCTCCCAAAACTGCAAAAATGATTCCAAATGGATATTTGGTCTTCGAGGACGAGACGTTCCTGGATTCTACTGTTGCCAAGATGAATGCCCTTAGGAAGAGTGGACAGTTCTGTGACGTTAGACTGcagGTGTGTGGTCATGAGCTGATGGCGCACCGTGCAGTCCTGGCTTGCTGCAGCCCGTACCTGTTTGAGATCTTTAACAGCGATCTGGAGCCTCACGGCATCTCCCATGTGAAGTTTGAGGATCTGAACCCTGAGGCTGTGGAGATCCTGCTCAACTACGCCTATACTGCCCAGTTGAAAGCAGATAAGGAGTTGGTTAAGGAGGTCTACTCTGCAGCCAAAAGGCTTAAGATGGAAAGGGTGAAGCAGatttGCGGAGACTACCTGCTCTCTAAGATGGAGTCCCAGAATGCCATTTCCTATCGCAACTTTGCCAGCAGCATGGGGGATACTCGTCTGCTAGCCAAGATTGACTGCTACATCCAGGAACATCTTTTGGAGATCTCGGAGCAGGAGGATTTCCTCAAATTGCCTCGTCTGAAGttggaGGTGATGCTAGAGGATCATCTGAGCTTGCCCAGCAATGGGAAGCTGTACTCGAAGGTGATCAGTTGGGTGCAGCGCAGCCTGTGGGAGAACGGGGAGCCGCTAGAGAGACTGATGGAGGAGGTGCAAACGCTGTACTATTCGGCCGATCACAAGCTGCTCGATGGGGGCCTGCTTGAGGGCCAGGCCGAGGTGTTTGGCGCTGAGGATGACCGCATTCAGTTTGTGCAGaaaaagacACCGCGAGAGAACGTTCACAGGCAGCTGAGCAACAGCTCCTCCGGCAGCCTCTCACCCGGCTCCGCCAAACAGGAGTGGAAGTACATCGCCTCTGAGAAGACCACCAACAGTACATACCTGTGCCTGGCGGTGCTCAACGGCGTGCTGTGTGTCATCTTCCTGCATGGGCGGAGCAGTCCCCAGGCCTCACCCTCGGCCACGCCCTGCCTGCAGAAGAGCTTGAGCTTCGAGGCTCCGTTCCTAGAAGAGGATCAGGAGCGGCTGCTGGCTCCCATGCACTACGCCCGCTCTGGCCTTGGCACTGCTGCGCTGAACGGCCGACTGATTGCTGCAGGTGGTTATAACCGTGAGGAGTGCCTGAGGACTGTGGAATGTTACGACCTGAAGACCGACAGCTGGAGTTTTATTGCACCGATGAGGACACCTCGGGCCCGCTTTCAGATGGCTGTGCTTATGGATCAGCTGTATGTGATGGGTGGCTCCAACGGCCACTCGGATGAGCTGAGCTGCGGGGAGATGTACAATCCAAATTCAGATGAGTGGACCCAAGTGCCAGAGCTCCGGACCAACCGCTGCAACGCAGGCGTCTGCTCTCTCAACAACAAGCTCTATGTTGTGGGCGGATCGGACCCCTGTGGGCAGAAAGGTCTGAAGAACTGTGACACTTTTGACCCTGTGACCAAGGAGTGGACCAGCTGTGCCCCCTTAAACATCAGGAGGCACCAGGCAGCCGTGTGCGAGTTGGATGGGTATATGTACGTGATTGGAGGAGCGGAGTCCTGGAACTGTCTAAACAGTGTGGAGCGCTACAATCCTGAGAATAACACCTGGACCCTGGTCGCCCCCATGAACGTGGCTCGGAGAGGCGCTGGTGTGGGCATCTACGCAGGAAAGCTGTTTGTGGTGGGCGGCTTTGACGGCTCACACGCCCTACGCTGCGTAGAGGTCTACGACCCGGCCCGCAACGAGTGGAGGATGCTGGGGAGTATGAACTCGGCGCGGAGCAATGCTGGTGTGGCTGTGCTTGGCAACCTCATCTTCGCAGTGGGCGGCTTTGATGGCAACAACTTCCTCAACACAGTGGAGGCGTACAACCCGGAGCTGGACGAGTGGAGCACCTGCGCTGAGGCTTTCAGCAGCGCCTGATAGATGTGATAGGCAGAAGGATGGGGCGTGTTATTGGGTAATGTCTCTCTCAAACTAACAGGCTTAGTGACGTAATCGTGCTTCGTGATGTCATGTATGTTAATGGGAAAGGGGGTGGGGCTTTGGACTTTGTAGGGGGGGTTATGTGGGTCTTCAGTGAAGACT

Function

symbol description
ivns1abpa Predicted to be located in cytoplasm; cytoskeleton; and nucleus. Is expressed in several structures, including ectoderm; pronephric duct; pronephric mesoderm; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in immunodeficiency 70. Orthologous to human IVNS1ABP (influenza virus NS1A binding protein).
ivns1abp Involved in RNA splicing; negative regulation of protein ubiquitination; and response to virus. Located in cytosol. Implicated in immunodeficiency 70.

NR:

description
PREDICTED: influenza virus NS1A-binding protein

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K15046 IVNS1ABP, NS1BP; influenza virus NS1A-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918432.2 True 2519 mRNA 0.55 15 6034549 6048522

Neighbor

gene id symbol gene type direction distance location
arpc5b arpc5,arpc5b,LOC103045524,LOC107698380,LOC107599090,LOC107732423,LOC104921830 coding upstream 124654 5903579 ~ 5909895 (+)
gabrr1 gabrr1,LOC108256869,LOC108427508,LOC107742995,LOC107680312,LOC107392250 coding upstream 170933 5848012 ~ 5863616 (+)
gabrr2b LOC108256881,LOC108427479,LOC103361227 coding upstream 199606 5810314 ~ 5834943 (+)
ube2j1 ube2j1 coding upstream 226268 5778423 ~ 5808281 (+)
trnag-gcc_30 NA coding upstream 291687 5742792 ~ 5742862 (+)
LOC117596580 NA coding downstream 314642 6363164 ~ 6368783 (+)
LOC117596543 LOC108256778 coding downstream 331551 6380073 ~ 6384224 (+)
LOC117596544 LOC108261522,LOC108256778 coding downstream 445895 6494417 ~ 6585492 (+)
LOC113529075 LOC108275256,LOC108427497,LOC100690439 coding downstream 1383966 7432488 ~ 7497053 (+)
nrl LOC108275247,LOC108427498 coding downstream 1471926 7520448 ~ 7525893 (+)
G408711 NA non-coding upstream 144750 5889513 ~ 5889799 (+)
G408531 NA non-coding upstream 428965 5605371 ~ 5605584 (+)
G408378 NA non-coding upstream 628498 5403467 ~ 5406051 (+)
G408376 NA non-coding upstream 632264 5401931 ~ 5402285 (+)
G408369 NA non-coding upstream 656615 5376056 ~ 5377934 (+)
G408805 NA non-coding downstream 44 6048566 ~ 6066515 (+)
G408821 NA non-coding downstream 19407 6067929 ~ 6068392 (+)
G408823 NA non-coding downstream 22064 6070586 ~ 6070797 (+)
G408824 NA non-coding downstream 23080 6071602 ~ 6072669 (+)
LOC117596591 NA non-coding downstream 35162 6083684 ~ 6093863 (+)
lyrm2 lyrm2 other upstream 298286 5733660 ~ 5736263 (+)
map3k7 map3k7 other upstream 690487 5322646 ~ 5344062 (+)
epha7 epha7 other upstream 1018087 4938498 ~ 5016462 (+)
LOC113529331 NA other upstream 1374854 4655964 ~ 4659695 (+)
LOC117596542 LOC108254905,LOC108254838,LOC108261645,LOC108261364 other upstream 2100314 3869287 ~ 3934235 (+)
LOC117596576 LOC108256778 other downstream 199539 6248061 ~ 6309253 (+)
LOC117596600 NA other downstream 223510 6272032 ~ 6276665 (+)
G408893 LOC108261158,LOC108256778 other downstream 321984 6370506 ~ 6795220 (+)
LOC117596579 NA other downstream 346334 6394856 ~ 6437763 (+)
G408929 NA other downstream 507841 6556363 ~ 6642498 (+)

Expression


Co-expression Network