LOC117596573 (LOC108280157)


Basic Information

Item Value
gene id LOC117596573
gene name LOC108280157
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 6613273 ~ 6739527 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU485441
cagaaaCTCACCTGGGAGAGCGACAGAACAGGACgtctgacagaaatgttaatTGATGAACACTACCgtggcagacttcagctgtttaataacatttctcctgctaatctgtctctgctcatatctgacctgagagaagaggatcagggagtctacaggtgcagcactgagaaggaacacagagacatcaggatttatgttaaaggtaaagcatttaaatacacaataaaagctgatattCACTGTGAAAGCAGACTTGATAAGTGTTCAAAtgaattatagttacatatgaAACATAAATGTCTACTCCATTTACCATAACTAAAGGGGAATTAATCCAGGAGTCATATTGTGACACATCAGTATCAAGTGATAAATGGCAGTAAATACTGATTATGGTATCAGACTGACCTGAACTTTGGAATGCtatcagattggatttgacatttctcagtctaatctaggatttattttggtaacactgtagtgtttatagagctacatgacacctgtataatcccttcatgacaactgacataagcctacataaaGCAAACAGATCTAACCCGGGTTAATTAAAGGTTAACAGCTTTCATGACGCTGGTTATCAACTTTCTCAGTAAACCCAGGTTTTAACCCTGAATCAGGGTTTACTCAGCGTGCGCGTGCACATAAAAGCCAGACGTTTGCAgcaaacagccaatagcgttcaagatggaaaaaagcaggtgaGCAGACTTCCGGCTGAAGAGCAAGAGATTATTATGCAGAAATGAGGAATTTAAACCTACAATAACCACAAAAAGCAACACTGTTGCAGCTGCTAAAGCTGGAGAAAATTACTGATTGTgtaaataagtttatttttatagactcacaatgacaataaactgactgaaaa
>XM_034302054.1
atgaagtgcttgtatcttttgtctgttgtgtttcacgtcgctgcaggctgtgctctctctggtgATTATAATCAGGAAGGAATAGTAGGATACACTGGtgcttcagtgctgttaccctgctcctgctctgacctgcacaccaaacctcagaaaCTCACCTGGGAGAGCGACAGAACAGGACgtctgacagaaatgttaatTGATGAACACTACCgtggcagacttcagctgtttaataacatttctcctgctaatctgtctctgctcatatctgacctgagagaagaggatcagggagtctacaggtgcagcactgagaaggaaTACAGAGACATCAGGAtttatgttaaaggctgtgctctctctggtgAGAAAAATCAGGTAGTGATCACACGACACAAAGGtgcttcagtgctgttaccctgctcctgctctgacctgcgcaccaaacctcagaaattCACCTGGGAGAGCTACAGAACAGGACGTCcgacagaaatgttaaatgatgaacactaccatggcagacttcagctgtttaataacatttctcctgctaatctgtctctgctcatatctgacctgagagaagaggatcaggGAGTCTACAGctgcagcactgagaaggaaTACAGAGACATCAGGAtttatgttaaaggCTGTGAGCTGGTGAAGAAGGCAGAGGTAGAGGACGTGACTGTGTTCACAGGAGAGTCTGTAGTTCTGCCCTGCGTCTGCACTTACCTACAGGCCAAACCACAGTCTCTAAAATGGGAGTTTTCATTACCAGCAACTGGAATCAGTCACTTTCAGGAAATTTACCCTGAACAGACTGGACATCACAGAAACTGGTCAGTCAAACTGGTCAGTAAAATCTCTCCAGGAAACCTCTCTCTACTCATATCAGACCTGACTGAAGAGGACCAGGGAATCTACAGATGTTCTGTACAGGCTGATAGCAGAGATTTCAGATTATAtgttaaagGACGAAGAGAAACTTCAACACActcgaggaaaacagacacaacacctccatcagaacagcctcagaGAGGAAGATGTGGAGAGAACGTGATTACTGATGGACATCAGGACTGTGAGGGAAAGCAGGAGGATCAGACTGTACCTGATGTTGAAACcttctgtattaaataacacattaacacagccggAGCAGCACGAGTTCAGATTAACgctggagagaaaactgaatatgccagcattataacaaactaatccacagtaaatatacacacattctcagatattatagaataatgctgaaaacatatattaaatacacactatGGCAAGCACAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU485441 False 901 lncRNA 0.38 3 6614797 6661699
XM_034302054.1 True 1320 mRNA 0.45 7 6613273 6739527

Neighbor

gene id symbol gene type direction distance location
LOC117596544 LOC108261522,LOC108256778 coding upstream 27781 6494417 ~ 6585492 (+)
LOC117596543 LOC108256778 coding upstream 229049 6380073 ~ 6384224 (+)
LOC117596580 NA coding upstream 244490 6363164 ~ 6368783 (+)
ivns1abpa ivns1abp,ivns1abpa,LOC108256770,LOC107732388,LOC107553504,LOC107726450 coding upstream 564751 6034549 ~ 6048522 (+)
arpc5b arpc5,arpc5b,LOC103045524,LOC107698380,LOC107599090,LOC107732423,LOC104921830 coding upstream 703378 5903579 ~ 5909895 (+)
LOC113529075 LOC108275256,LOC108427497,LOC100690439 coding downstream 692961 7432488 ~ 7497053 (+)
nrl LOC108275247,LOC108427498 coding downstream 780921 7520448 ~ 7525893 (+)
LOC113528764 LOC108427476,LOC103026240,LOC108274573 coding downstream 790700 7530227 ~ 7546810 (+)
senp6a senp6 coding downstream 839738 7579265 ~ 7607340 (+)
myo6a myo6 coding downstream 872328 7611855 ~ 7726643 (+)
G408904 NA non-coding upstream 21233 6388520 ~ 6592040 (+)
G408894 NA non-coding upstream 81366 6527297 ~ 6531907 (+)
G408913 NA non-coding upstream 155588 6434997 ~ 6457685 (+)
G408892 NA non-coding upstream 237691 6374374 ~ 6375582 (+)
LOC117596601 NA non-coding upstream 256094 6317383 ~ 6357179 (+)
LOC117596596 NA non-coding downstream 55665 6795192 ~ 6796340 (+)
LOC113529310 NA non-coding downstream 139111 6878638 ~ 6880233 (+)
LOC117596589 NA non-coding downstream 189073 6928600 ~ 6931893 (+)
LOC117596583 NA non-coding downstream 215057 6954584 ~ 7032454 (+)
G408985 NA non-coding downstream 221512 6961039 ~ 7029547 (+)
LOC117596579 NA other upstream 175510 6394856 ~ 6437763 (+)
LOC117596576 LOC108256778 other upstream 304020 6248061 ~ 6309253 (+)
LOC117596600 NA other upstream 336608 6272032 ~ 6276665 (+)
lyrm2 lyrm2 other upstream 877010 5733660 ~ 5736263 (+)
map3k7 map3k7 other upstream 1269211 5322646 ~ 5344062 (+)
LOC117596594 NA other downstream 25384 6764911 ~ 7071033 (+)
G409600 NA other downstream 1138268 7877795 ~ 7878545 (+)
LOC113529148 NA other downstream 2358850 9098377 ~ 9104224 (+)
G410936 snx3 other downstream 3438522 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 3458189 10197716 ~ 10230807 (+)

Expression


Co-expression Network