G408985


Basic Information

Item Value
gene id G408985
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 6961039 ~ 7029547 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU485506
AGTACACCCTGCCAAGAACAAGTCAAATGGCCCAGCCGGAGGAACAGACCAGAAGAGCTGAGGTTAAGATGGCAGTCACCATGGTGCAGCACAACATTCCTCTGGCTTTATCTGACCACTTGAGCCCATTCCTCAGTGAGTGTTTCCCTGACAGATTGCCCAAAGACATTCTTCTGCCAGGACTAAGACCAGCGCCATAATCAACAAGTGTATAGCCCCCTATCTGAAGAATGAACTAGTGAAGAACCTCTGCAATCAGCTTTTACATTAGCGACTGAGGGTTC

Function

GO: NA

KEGG:

id description
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU485506 True 284 lncRNA 0.49 3 6961039 7029547

Neighbor

gene id symbol gene type direction distance location
LOC117596544 LOC108261522,LOC108256778 coding upstream 375547 6494417 ~ 6585492 (+)
LOC117596543 LOC108256778 coding upstream 576815 6380073 ~ 6384224 (+)
LOC117596580 NA coding upstream 592256 6363164 ~ 6368783 (+)
ivns1abpa ivns1abp,ivns1abpa,LOC108256770,LOC107732388,LOC107553504,LOC107726450 coding upstream 912517 6034549 ~ 6048522 (+)
arpc5b arpc5,arpc5b,LOC103045524,LOC107698380,LOC107599090,LOC107732423,LOC104921830 coding upstream 1051144 5903579 ~ 5909895 (+)
LOC113529075 LOC108275256,LOC108427497,LOC100690439 coding downstream 402941 7432488 ~ 7497053 (+)
nrl LOC108275247,LOC108427498 coding downstream 490901 7520448 ~ 7525893 (+)
LOC113528764 LOC108427476,LOC103026240,LOC108274573 coding downstream 500680 7530227 ~ 7546810 (+)
senp6a senp6 coding downstream 549718 7579265 ~ 7607340 (+)
myo6a myo6 coding downstream 582308 7611855 ~ 7726643 (+)
LOC117596589 NA non-coding upstream 29146 6928600 ~ 6931893 (+)
LOC113529310 NA non-coding upstream 80806 6878638 ~ 6880233 (+)
LOC117596596 NA non-coding upstream 164699 6795192 ~ 6796340 (+)
G408937 NA non-coding upstream 290274 6639023 ~ 6670765 (+)
G408997 NA non-coding downstream 11706 7041253 ~ 7047384 (+)
G409001 NA non-coding downstream 31615 7061162 ~ 7082087 (+)
LOC117596598 LOC106674878,LOC106676183,LOC102302549 non-coding downstream 57283 7086830 ~ 7091428 (+)
G409021 NA non-coding downstream 69750 7099297 ~ 7208074 (+)
LOC117596599 NA non-coding downstream 87685 7117232 ~ 7119984 (+)
G408893 LOC108261158,LOC108256778 other upstream 165819 6370506 ~ 6795220 (+)
LOC117596573 LOC108280157 other upstream 221512 6613273 ~ 6739527 (+)
LOC117596581 NA other upstream 307021 6633365 ~ 6654018 (+)
G408929 NA other upstream 318541 6556363 ~ 6642498 (+)
LOC117596579 NA other upstream 523276 6394856 ~ 6437763 (+)
G409600 NA other downstream 848248 7877795 ~ 7878545 (+)
LOC113529148 NA other downstream 2068830 9098377 ~ 9104224 (+)
G410936 snx3 other downstream 3148502 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 3168169 10197716 ~ 10230807 (+)
armc2 armc2 other downstream 3206434 10235981 ~ 10295205 (+)

Expression


Co-expression Network