G408997


Basic Information

Item Value
gene id G408997
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 7041253 ~ 7047384 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU485523
CAACTGCGATGGTGAAAAACATGTAGAGAAAACAGTCGGTGTTTGTAGACTTTGCTCGACGCGAGTGCCGTATGCTCATGGCAATACATCTAATATGACGTCATCTACACCGTCATCACCCGGGGATTGATAGCGCGCGGGTATGAAGCCCGTTTCCGCCCcggagaaaaacattaaaaagATATCAGGCTTTGATGTTCAGGATTTTTGTATTGATCTTG

Function

GO:

id name namespace
GO:0048368 lateral mesoderm development biological_process
GO:0045202 synapse cellular_component

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05032 Morphine addiction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU485523 True 221 lncRNA 0.46 2 7041253 7047384

Neighbor

gene id symbol gene type direction distance location
LOC117596544 LOC108261522,LOC108256778 coding upstream 455761 6494417 ~ 6585492 (+)
LOC117596543 LOC108256778 coding upstream 657029 6380073 ~ 6384224 (+)
LOC117596580 NA coding upstream 672470 6363164 ~ 6368783 (+)
ivns1abpa ivns1abp,ivns1abpa,LOC108256770,LOC107732388,LOC107553504,LOC107726450 coding upstream 992731 6034549 ~ 6048522 (+)
arpc5b arpc5,arpc5b,LOC103045524,LOC107698380,LOC107599090,LOC107732423,LOC104921830 coding upstream 1131358 5903579 ~ 5909895 (+)
LOC113529075 LOC108275256,LOC108427497,LOC100690439 coding downstream 385104 7432488 ~ 7497053 (+)
nrl LOC108275247,LOC108427498 coding downstream 473064 7520448 ~ 7525893 (+)
LOC113528764 LOC108427476,LOC103026240,LOC108274573 coding downstream 482843 7530227 ~ 7546810 (+)
senp6a senp6 coding downstream 531881 7579265 ~ 7607340 (+)
myo6a myo6 coding downstream 564471 7611855 ~ 7726643 (+)
LOC117596583 NA non-coding upstream 8799 6954584 ~ 7032454 (+)
G408985 NA non-coding upstream 11706 6961039 ~ 7029547 (+)
G408991 NA non-coding upstream 25810 7013735 ~ 7015443 (+)
LOC117596589 NA non-coding upstream 109360 6928600 ~ 6931893 (+)
LOC113529310 NA non-coding upstream 161020 6878638 ~ 6880233 (+)
G409001 NA non-coding downstream 13778 7061162 ~ 7082087 (+)
LOC117596598 LOC106674878,LOC106676183,LOC102302549 non-coding downstream 39446 7086830 ~ 7091428 (+)
G409021 NA non-coding downstream 51913 7099297 ~ 7208074 (+)
LOC117596599 NA non-coding downstream 69848 7117232 ~ 7119984 (+)
LOC117596595 NA non-coding downstream 81921 7129305 ~ 7129980 (+)
G408893 LOC108261158,LOC108256778 other upstream 246033 6370506 ~ 6795220 (+)
LOC117596573 LOC108280157 other upstream 301726 6613273 ~ 6739527 (+)
LOC117596581 NA other upstream 387235 6633365 ~ 6654018 (+)
G408929 NA other upstream 398755 6556363 ~ 6642498 (+)
LOC117596579 NA other upstream 603490 6394856 ~ 6437763 (+)
G409600 NA other downstream 830411 7877795 ~ 7878545 (+)
LOC113529148 NA other downstream 2050993 9098377 ~ 9104224 (+)
G410936 snx3 other downstream 3130665 10178049 ~ 10182672 (+)
afg1lb lace1 other downstream 3150332 10197716 ~ 10230807 (+)
armc2 armc2 other downstream 3188597 10235981 ~ 10295205 (+)

Expression


Co-expression Network