G408364


Basic Information

Item Value
gene id G408364
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 5356138 ~ 5375068 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU484780
tgcacacacacacacacacacacacacacacacacacacacacacacactcattcatgtaTTTATGCTTACTCAAACACTCTTTATTTATCTAGAGCATTCAGACACACAGTCAATCGTTTCACATACTCACTACCAGACTCACTCAGTCACCATAGAGGATCTTTAAACTAAATTAAGATGTCTTCCTCTCCCAGCGATCATCGATCTCTTCATCCAGGCTCCTCTGTGACGTCCTCTCAGTGTACAGGCTTTGACGAGAGTTAGCAGTGTAAGTGTAAGGTGAAGTACCGGTAGCTGTGTCCAGTTTGTCTTTCAGCTTATATGGCACTTGGCCaaagaaaattataataatgaacTGCAGTGGAACAGCTGTCCTAAGCAGAAATATCTGATCCCTCTGTGCTGCTAAATAATAGGTCAGattcataaaaataaagcacGACTCAACATTTTACCCACTTTCTCCCATCTTTTCGTTTGAGGCCAGCACTTTCTTGTGTGCGTATGCTTaaagtagtgtttgtgtagtgtttaaTTGAATCATGGTTAAACAGGAGACCTAGTTTTAAATTATAAAGCATACTTGCTGTTAAGTAAAACATGCGTCAGGATAAAAATCCACTCCTGGATACTGACTCGGTCATTTTGTTGACTAGTCATTTCAGACCTGGTAGAATTACTACACTACTATCCTTTTCACTGCACAATGCTGTCACGCAGTATACTTTGCATTACTTTATAGAGTATATATGTTGGAGTACTGCAGTGTACTTTATTATATTCTAGTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU484780 True 791 lncRNA 0.39 2 5356138 5375068

Neighbor

gene id symbol gene type direction distance location
LOC113528767 LOC108256873 coding upstream 658214 4690246 ~ 4697924 (+)
LOC113529399 NA coding upstream 667769 4684720 ~ 4688369 (+)
LOC113528978 LOC108262032 coding upstream 702140 4647246 ~ 4653998 (+)
kcnk2b kcnk2,LOC107680301,LOC107731508,LOC107554930,LOC107660545 coding upstream 755281 4571554 ~ 4600857 (+)
smyd2b smyd2 coding upstream 869867 4472644 ~ 4486271 (+)
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107665348,LOC107683937 coding downstream 122099 5497167 ~ 5546607 (+)
katna1 katna1,LOC107755263,LOC107683938,LOC105902230,LOC107737259,LOC107665349 coding downstream 173555 5548623 ~ 5557518 (+)
LOC113529080 NA coding downstream 214789 5589857 ~ 5603470 (+)
lrp11 lrp11,LOC103399213 coding downstream 309008 5684076 ~ 5694444 (+)
nup43 nup43,LOC106571302 coding downstream 338388 5713456 ~ 5719651 (+)
LOC113529394 NA non-coding upstream 112463 5223681 ~ 5243675 (+)
LOC117596620 NA non-coding upstream 145978 5205579 ~ 5210160 (+)
LOC117596619 NA non-coding upstream 182750 5161671 ~ 5173388 (+)
LOC117596549 LOC108261722 non-coding upstream 676292 4668864 ~ 4679846 (+)
LOC117596517 NA non-coding upstream 687437 4666686 ~ 4668701 (+)
G408369 NA non-coding downstream 988 5376056 ~ 5377934 (+)
G408376 NA non-coding downstream 26863 5401931 ~ 5402285 (+)
G408378 NA non-coding downstream 28399 5403467 ~ 5406051 (+)
G408531 NA non-coding downstream 230303 5605371 ~ 5605584 (+)
G408711 NA non-coding downstream 514445 5889513 ~ 5889799 (+)
map3k7 map3k7 other upstream 12076 5322646 ~ 5344062 (+)
epha7 epha7 other upstream 339676 4938498 ~ 5016462 (+)
LOC113529331 NA other upstream 696443 4655964 ~ 4659695 (+)
LOC117596542 LOC108254905,LOC108254838,LOC108261645,LOC108261364 other upstream 1421903 3869287 ~ 3934235 (+)
LOC113528760 LOC108254838,LOC108261645,LOC108254905,LOC108261364 other upstream 1492658 3811890 ~ 3863480 (+)
lyrm2 lyrm2 other downstream 358592 5733660 ~ 5736263 (+)
LOC117596576 LOC108256778 other downstream 872993 6248061 ~ 6309253 (+)
LOC117596600 NA other downstream 896964 6272032 ~ 6276665 (+)
G408893 LOC108261158,LOC108256778 other downstream 995438 6370506 ~ 6795220 (+)
LOC117596579 NA other downstream 1019788 6394856 ~ 6437763 (+)

Expression


Co-expression Network