LOC117596517


Basic Information

Item Value
gene id LOC117596517
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 4666686 ~ 4668701 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577601.1
TGTTGTTGGTGATTGACCTGGCAGCCATCttagagcgagagagaaagaagaacgATAAGGACTTTGTATTGTAAAAAGCAAAGGGAAGTGTATGCGTGGGAGTTGCCCAGCTACATTCCTCACTCACATCGACGGCGTCACGGGTGTGTTTCGAACAACAGATCCTGAGCCGtgcttacaaaaaaaagaaatgaaaagaagagcaataaaaagaaaagCCTCAGTCATGAGCAGTGTACCAATTAAAAGGAGCTGCACAAGGAACAGTGGTGGTAAAACATCCATTTATGTtcattaaacaatattaatggATTGTCAGTGAtcttcttttttaagaatgatTGTGTACAGAATACAAAcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577601.1 True 361 lncRNA 0.40 4 4666686 4668701

Neighbor

gene id symbol gene type direction distance location
LOC113528978 LOC108262032 coding upstream 12688 4647246 ~ 4653998 (+)
kcnk2b kcnk2,LOC107680301,LOC107731508,LOC107554930,LOC107660545 coding upstream 65829 4571554 ~ 4600857 (+)
smyd2b smyd2 coding upstream 180415 4472644 ~ 4486271 (+)
LOC113529159 LOC108256151,LOC108441115,LOC103022569,LOC105908325 coding upstream 228133 4408481 ~ 4438553 (+)
rps6kc1 rps6kc1 coding upstream 335689 4295324 ~ 4330997 (+)
LOC113529399 NA coding downstream 16019 4684720 ~ 4688369 (+)
LOC113528767 LOC108256873 coding downstream 21545 4690246 ~ 4697924 (+)
bach2b bach2 coding downstream 697141 5365842 ~ 5474398 (+)
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107665348,LOC107683937 coding downstream 828466 5497167 ~ 5546607 (+)
katna1 katna1,LOC107755263,LOC107683938,LOC105902230,LOC107737259,LOC107665349 coding downstream 879922 5548623 ~ 5557518 (+)
G408057 NA non-coding upstream 260077 4406357 ~ 4406609 (+)
G407962 NA non-coding upstream 373671 4292312 ~ 4293015 (+)
G407971 NA non-coding upstream 380849 4283872 ~ 4285837 (+)
G407959 NA non-coding upstream 412779 4252893 ~ 4253907 (+)
LOC117596607 LOC108261645 non-coding upstream 794825 3870959 ~ 3871861 (+)
LOC117596549 LOC108261722 non-coding downstream 163 4668864 ~ 4679846 (+)
LOC117596619 NA non-coding downstream 492970 5161671 ~ 5173388 (+)
LOC117596620 NA non-coding downstream 536878 5205579 ~ 5210160 (+)
LOC113529394 NA non-coding downstream 554980 5223681 ~ 5243675 (+)
G408364 NA non-coding downstream 687437 5356138 ~ 5375068 (+)
LOC113529331 NA other upstream 6991 4655964 ~ 4659695 (+)
LOC117596542 LOC108254905,LOC108254838,LOC108261645,LOC108261364 other upstream 732451 3869287 ~ 3934235 (+)
LOC113528760 LOC108254838,LOC108261645,LOC108254905,LOC108261364 other upstream 803206 3811890 ~ 3863480 (+)
tab2 tab2 other upstream 916439 3672852 ~ 3750247 (+)
cdk19 cdk19,LOC108254892,LOC107653155,LOC107660514 other upstream 1000837 3592143 ~ 3665849 (+)
epha7 epha7 other downstream 269797 4938498 ~ 5016462 (+)
map3k7 map3k7 other downstream 653945 5322646 ~ 5344062 (+)
lyrm2 lyrm2 other downstream 1064959 5733660 ~ 5736263 (+)
LOC117596576 LOC108256778 other downstream 1579360 6248061 ~ 6309253 (+)
LOC117596600 NA other downstream 1603331 6272032 ~ 6276665 (+)

Expression


Co-expression Network