AMCG00000277 (LOC106517965,LOC107602930)


Basic Information

Item Value
gene id AMCG00000277
gene name LOC106517965,LOC107602930
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9414677 ~ 9427542 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000277
GGCCCCGCAGCGGAGGGCAAGCGCGTCACCGCTCCCAGCAGCCTCTGCGCCCTGGAGGGAGCCTCTGAGGAGCAGGCAAGTCTGCGAGTGGAGTGGAGCGGACTGGGACCGGGGCACGAACAACAGGCAGGCAGgcggaaaaaaaaactgctggtGCCCTATTACTGGGGGCTCCGGGGTGGTTTCGTGGCGTTGAGGTGCCCCCTGAGCCTGCGAGTTATGCTTTCCAGAAAGAAGAGTAAAAACGAAGCGTCCAAACCCGCCGAGGTGCACGGGAAGTACGTGAAGAAGGAGACGTCGCCCCTGCTGAGAAACTTGATGCCCTCGTTCATACGGCATGGGCCAACCATCCCTAGACGAGCAGAGATCCCTCTCCCGGAGCCGGGGCCCTCTGGGTACCCTGTGGGGCCCAGTGAGCCGGTAGTCTCCAGGAACAAGAGTTTCCTGCGCACTCCTGTGCAGCGTCCCCCCCACGAGATAGCTCGACGAGAGAGCCATCGCCTGTCTGCACCCCCCTACCTGCCACGCAGCCTGGGAGACCTGCCGCGGGAGTATGGCGGCTCCTCACAGTCCTTCCTCACGGAGGTGAACCCTGTGGCGGAGAACGGAGAAGCCAGCGGCGGTGCCCGCTACTACTACCCCCCTGACCCATACTATGAAGGGCAGCAGCGACGGCGGCATGTGCCAGACCGCTTTCATGAGGACTTTAGATACTATGAACATAATAGCGACCCTTTCCAAAGagggccccctccccctcagtcCCAAGGCAGACACCCAGCTGCTATCGGACGAATACAAGCTAAGTCTCTGGGGAACCTGGCCAGTCCCAGTGGGGAGGACTTGCCACTGCCTGCTGGTTGGACAGTGGACTGGACCATACGTGGCAGGAAGTACTACATCGACCATAACACCAACACCACCCACTGGAGCCACCCCCTGGAGCGGGAGGGGCTGCCCCCGGGCTGGGAGAAGGTGGAGTCGGCAGAGTTTGGGGTTTACTACGTCGACCACATCAACAAGAGGGCGCAGTACAGGCACCCTTGCGCGCCAAGTCTATCGGTCTCCTCCTCCAGTGTCCCTCGATATGACCAGccacctcctctccctcctccagtgGCCTACCAGCCTCGCCAGGCTGATCGCAACCAGCCTGTTCTTGTGCCAGCCAACCCCTACCACACGGCCGAGATCCCAGACTGGCTGCAGGTCTATGCAAGAGCACCCCTCAAGTACGACCACATCCTGAAGTGGGAGCTGTTCCAGCTGGTGGATCTGGACACGTACCAGGGTATGCTGAAGCTGCTGTTCAtgaaggagctggagaggaTCGTCAAGTCTTACGAGGCCTACCGCCAGGCCCTGCTCACTGAGCTGGACACCCGCAAACAGCGGCAGCAGTGGTACGCCCAGCAGCACAGTAAGAACTTCACCGGGAACAAGTGATGGGGGACGACCATGGTGCAGCTTATGACTCCACTCGTGGGGATCACAGTTCCTAAGGTTTTGGATGGGGGGGACAAAAATTTAATTCCCTTCATACGTACTTGTGCCTTCGCAATTTGAACCAAAATTAGTGGTGGCCTTTTGCCAGGTTGAAAGCAGTGGTATGCCAATGCTTTTATGTCAATGAAAATGGGTTAAATATCTAGAATCTCTCCAGTACAACTGCTCTGGAGCCAGAGAGCGAAGGAATGGGTGAAGAGCTGGAGGTCCTTAAAGGAGAGAGAACATTTGGTGTGGTGGTTTTGAGACAACATCTACTCTTGTCAGCATTGTTCACACCTGGAGCAGCGTGTGACGAGAGCAGTGGTTTCTGTTGCAGTCACCTCCCCCACCTTCATTTTTTATCTTTGGTTGGCCTCTGTTACATCTGTTGAATGACTGTGTTGAAGATCATGAATTCCTATTTTTCTTACTAAATTCATGGACATGTACCGATTCCAATCCCGTATAAGCTCTGCCAGGACCtttctttcaattgaaagtctGGGATGTCCAGTCAGGTTGGGCAGCTTCACATTAAAGAAGACCACATCCCCCTGAATTTCTGtgtataaatgaatgtacaCACTTTGATCCCTAAATATTCACTTACTGTCAttgaagcaattaaaatatatctttttttttttttttttttttttttcatgctacTGTCAAATTATTCTAATCCCTTTTCACAAATGCACCTTGGCTCCTTCAGCTGATATTATTACTGGCTTCAGCTGAGGTTTCGTGAGATCGAGAATTGCTTGATGTATTGCAGCTTGAGCCAGAGTGGATTTTAACATTATCTTAGTAACCTGGAATCCATATCTAAGCCCTCAATTAATCATTAATTTGAAGAGCTCAGCATTGTGCTCTCGGCGCTCCAAATATCTCTGAATCTGAATGTCAACCTTTTCTAAAgcgaaaaaacatttaaaacgtATAAAACTAGAAGATCTTCCAAATCTTTTTTGATTAATCTTACTAAGGCAGGAAAGCAGCTCCCGATTGCAAAGATGGTACAACTTCACGGCGCTCTATTCTTGGGGACCCAGTATTGAGTATCTGGAACACTAGCTCTGATATCAGAGAGTTTGGGTTGAAACATCACATTTAAGAGTCTTTCTCTTCAGTGAAATGTCTATATTCCCCATGTTGTCTTAATGAAGTATTACAGGATTAGTACTGGGTTGGAAAAGATAAGAGAAGCAGCtatcacaattacattttaaacctgcttgaaatcttttaaaaaattTTTGCCGTTTGCTTTCTCAGTGGACACATTTGTATGCAAGGTACAGTAATTGAATTTATCGCTTTGACGCATTCAAAAACTATATAAACTGtaactttcttttaaaagtaatgTTAACAATGGGACAGATAGTCAGTTTAGTCTGTTGAATTCTCTTAATTAAGTGGACAGGTCTAGGGAGGGTGTGGACCAGGCTGACCTGTCCTCATGTGGACACTAGTTATATATACTCCAGTCTCCAGTACTATAACACTATCTGGGTTATCGAATGTGTTGTCATCTTGTAGACTGCTTTGTCCTTCTTCCACATTTTATCATTGTCATGGTCTGTCTTCAGTTTTACGTAAAACTGAACTACATTGTTCAAAACGATATTAAAATTGAGAATTGCCTGCCACTCGAAGACATGGAGAATAAGAAAGCAATCagcaataatgtttttttcttaatcagGGACTTCTGAAGAGGCCTTTTTTATAAAGCCAAATGACtgatacattttgtacaaatatattttgtaaaaaaaaaaaaaaaaaaaaaaaaaacacattttgaaattaaaa

Function

NR:

description
PREDICTED: protein salvador homolog 1-like, partial

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K16686 SAV1, Sav; scaffold protein salvador

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000277 True 3312 mRNA 0.48 6 9414677 9427542

Neighbor

gene id symbol gene type direction distance location
AMCG00000278 NA coding upstream 2345 9378563 ~ 9412332 (+)
AMCG00000274 pygl,LOC104938237 coding upstream 51243 9355981 ~ 9363434 (+)
AMCG00000273 trim9,LOC102776798 coding upstream 59529 9331536 ~ 9355148 (+)
AMCG00000271 NA coding upstream 257735 9121065 ~ 9156942 (+)
AMCG00000266 NA coding upstream 334718 9035625 ~ 9079959 (+)
AMCG00000287 cdkl1 coding downstream 60375 9487917 ~ 9501368 (+)
AMCG00000288 l2hgdh coding downstream 74151 9501693 ~ 9508924 (+)
AMCG00000280 NA coding downstream 129976 9557518 ~ 9560476 (+)
AMCG00000283 NA coding downstream 261205 9688747 ~ 9705449 (+)
AMCG00000282 NA coding downstream 294348 9721890 ~ 9747008 (+)
G149253 NA non-coding upstream 129526 9280063 ~ 9285151 (+)
G149172 psmc6 non-coding upstream 398526 9013371 ~ 9016151 (+)
G149059 NA non-coding upstream 740891 8668980 ~ 8673786 (+)
G149056 NA non-coding upstream 829710 8584488 ~ 8584967 (+)
G149055 NA non-coding upstream 830670 8583648 ~ 8584007 (+)
G149359 LOC103376870 non-coding downstream 292405 9719947 ~ 9776988 (+)
G149416 slc39a9,LOC107721951,LOC107664419 non-coding downstream 530171 9957713 ~ 9962571 (+)
G149415 NA non-coding downstream 545506 9973048 ~ 9975172 (+)
G149450 NA non-coding downstream 593880 10021422 ~ 10021853 (+)
G149454 NA non-coding downstream 602152 10029694 ~ 10030786 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other upstream 829404 8579717 ~ 8585273 (+)
AMCG00000251 NA other upstream 839553 8572936 ~ 8575124 (+)
AMCG00000217 gpx2 other upstream 2051970 7359278 ~ 7362707 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other upstream 2090226 7313872 ~ 7324451 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other upstream 2117712 7290666 ~ 7296965 (+)
AMCG00000285 map4k5 other downstream 12519 9440061 ~ 9486689 (+)
AMCG00000286 sos2 other downstream 87280 9514822 ~ 9546411 (+)
AMCG00000281 cpsf2,LOC106608196 other downstream 134015 9561557 ~ 9591088 (+)
G149424 NA other downstream 541782 9969324 ~ 9970801 (+)
G149525 LOC100846954,LOC107575789 other downstream 1107048 10534590 ~ 10535137 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006810 sav1 coding NC_007124.7 CM002897.2 36787077 ~ 36798204 (-)
grasscarp (Ctenopharyngodon idella) CI01000012_05006941_05018373 SAV1 coding CI01000012 null 5006941 ~ 5018880 (+)