AMCG00000287 (cdkl1)


Basic Information

Item Value
gene id AMCG00000287
gene name cdkl1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9487917 ~ 9501368 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000287
GGAGCCCGGACACAGTTCCTATGGGGACAGGCCAGTAAAAGCCCAGGCACTCACTTTGCTCACGCAGAGCTCGCAGTGTGCGTCTCCCACCATAAAACGGCCGTGCTTCCTCGCATCTgcgtccaccagagctgcaggaccgaccgaccgaccggGGCAACGCCGTCGCCTTGCCCCGCTGCGTGAAGACGACGACAGGACGGAAAGgtTGAAACGGGAGTCTTTCCTTCCCTCCCCTTTGTAGCAGTGGTCAGGGCAGGATTGGAAGAGCAAGGGAAGGCTTTTTGATGCCCCTGAACCCCTATTCATCCTGTACCAGGATGGAGAAGTATGAGAAAATCGGTAAAATCGGGGAGGGCTCCTACGGAGTTGTGTTCAAGTGCAAAAACAAAGAGTCAGGGCAGATCGTGGCCATTAAGAAGTTTGTGGAGTCCGAAGATGATCCGATAATAAAGAAGATTGCACTGAGGGAAATCAGGATGCTGAAGCAATTGAAGCACTCCAACCTGGTTAACCTGATCGAAGTGTTCCGGCGAAAGCGCAAGCTGCACCTGGTGTTTGAGTACTGCGACCACACCGTCCTCAACGAGCTCGACCGCTACCCCCGAGGGGTTCCAGAGCACCTGGTGAAGAGTATAACGTGGCAGACCCTCCAGGCCGTCAACTTCTGCCACAAACAGAATTGCATTCACAGGGATGTGAAACCAGAGAATATCCTGATCACCAAACACCAGGTCATTAAGCTCTGTGACTTCGGATTTGCCAGGATATTGACGGGGCCCTGTGACTACTACACCGACTACGTGGCCACGCGCTGGTACCGCGCCCCTGAGCTCCTGGTGGGTGACACGCAGTACGGCCCCCCAGTCGACGTGTGGGCCATCGGCTGCGTCTTCGCCGAGCTGCTATCGGGAGTCCCCCTGTGGCCGGGAAAATCAGACGTAGACCAGCTGCACCTCATCAGGAAAACATTGGGCGATCTCACCCCCCGACATCAGCAGGTGTTCAGCAACAACCAGTTCTTCAGTGGCGTGAGCATCCCGGAACCAGAAGAAATGGAACCCTTAGAAATGAGATATCCTAATCTGTCCCATCAAGCACTGGGGTTGATGAAGGGTTGCTTACGGATGGACCCTGCAGAGAGGCTGACCTGTGAACAGCTCCTGGAGCACCCGTACTTCGACAGCCAGCGGGAGGAGCGCGAAGCGGCCGCCCGGGAGCAGGACCGGGCCACCAAGAGGAGATCCAGACTGCCACGCAAACACCTCCCGCCAGGGTACTTGCCTCAGCTGACTGGCAGCAACATATTCCCGTCCCTGGACAACAAGAAATATTACAGCAACTTGCGGAAGTTCAACTACCACTTCCCTAACATCTAAACACTCTGCCTCGGACCAGGAAAGACTGAGACTCGCAAGCACCcgtttctgtttgtgtctgctcgGACAAAGAAAAGCACTTGGCAGATTGGCTCCACAATCTCGTATAGAGCAGGTAGAGGGAAGAACGCGGAGGTTTCCTTGTCAGTTGGCACAGTCAGGTGCCGTCATCCTATGCACTGTAACAGCTTTTCAACTGGAAGACTATTCTGTGGTTTGACTGTCTTGATTTTCTCCTTTTGCATGTCTGTGTATTGACAAGGTTCACTACAGTGTGCCGCTATTAGATTCACAAGCAGAATTGGGCATAAAAACCATACTGCCTTCCCCAATTTGCCaaaaatatctttttttttttttttttttaaatgtacgcATTGatgttaatttccttttcttgctGGACATCTAAATTCGACGGTCGGAGAATGGTGGGAGGCCCGAGAAGGGGAGAAAGATATCTCTAGATCCAGTGCacttctccacacacacacaaaaagtctCTAAATGCAATTAAGTGATGGACAAACGAGGCATAATGCATTATTTCTTGCACCGTCTAAAATACACTTCAGGATTTGTTAAGGCGAGGGATTTTTGGTCGGAACAGACTTGCCAAACTACTTTGAAAGGTTAAAAGGTAAAATGCACGATGTCAGAGTAAATAAAATGCACGATGTCAgagtaaataaaatgcactaaTTCTTTAACAGAATCTCTCCAACCTCTTTACCTTTCATACAACTTTTAATACAGTAGCTATTTACAGGGTTTTATCAACAAGACCAACACAGAGACATTTGGGGtgtgtaataatatatacagccATTTCTGTCTCTCCCACTTCCAGATCCCCCAAAAGCCAACTTCTGAAAACCATTTGAACGCTGTCTAAACTGATACACTTCGATTGACACTTAGCCTGacttatgtttgtgtttatatatgtatgtttatccacacatgtatttatacaaacacactgtatgtacgtgtatgtacatatatacagtatatatgtatgtatttgtgtttatatattgttgtaCTTTTTTATGGAGTAATTATTAAGATCTTTAAGAACTAAAATAGcagacaaatatttaaaggtTTTGACAATGGTTATAATAAAGTGGAGTTAAATTCCTTATTTTagctttcattattttataaatggtaTTTTGTatcacaacaaaaaataacattcaggGGTTGTATTTGCTGTTCAGTCTCTCCAGCCCTGGCTGTCAGTCCAGGTCCAGCTCAATCTCCAGTTTAGGCAGAGCCGTCTGCAGCGTTTCGACGGTCCGGTCTTTCTGCTTTAATCCAGGGAGGTCACTGAGGAAAAGGTGCTCCAGATTCCTGCAGTGATGCAGGGCGAGGATGCCTCGGTCCGTCACATTGCCACAGGACACCACCTCCATCCGCCGCAGACTGGACTGAAGGTTCTCGATTTTGCTCAGTCTCTCCAGGCACACATCCTCTATGTAGATATTCTTGTTGAACTTAATCTCTTGAAGATGTTCCAAACCAtCCAGGTGGTCGAATCCTCGGAACATGATGCAGGACTCGGCTGCATCAATGGCCTGGATCTTGTACCTGCCCAGGGGGCCCGTCGGCAGGGCGTTGTAGTCATGCTGCCAGCGGTCGAAGCCCTGGTACCGCACCTTTGCCCCGCAGCGCAGGAGCCACTCGGCGGCGGCACGGTCAGGGCCCACCGCTTTGATCCGCTCATAGTCCACTTTGTTGAACACAGCATTCAGCCATCCCCAGAACTGTCTGCAGTTTTGTGGGGGAGCTGTCTTCGGCGCAGCAAGGATTAATTGAGCAGCCTTTGGCAAAAGATTCATATCCTCACCCTGAAAAAGATCATGTACTGTCaaaggttgtttttgttgtcagcTTGAAGCAGGAGACCTACacgaaatgtgaaatgtgtgtcGTACTTCAAATCTGTTTGTGCGCATGTTCAATTATATGGTGTGTGATTTATGGGCCACTGCAAGGTTTTGAACATATTTGCAGTCTATATCCTATGGGGCAGGATACAGACAGAGGCTAACTGAAACGGTCTGCAATGCGAAAACACATCTAGTCTTGCATCTAAAAACACGACGTTACCAACGTTGGAA

Function

symbol description
cdkl1 Enables protein kinase activity. Acts upstream of or within protein phosphorylation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including hypochord; nervous system; pleuroperitoneal region; spinal cord neural keel; and spinal cord neural tube. Orthologous to human CDKL1 (cyclin dependent kinase like 1).

NR:

description
PREDICTED: cyclin-dependent kinase-like 1 isoform X3

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08824 CDKL; cyclin-dependent kinase-like

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000287 True 3511 mRNA 0.48 13 9487917 9501368

Neighbor

gene id symbol gene type direction distance location
AMCG00000277 LOC106517965,LOC107602930 coding upstream 60375 9414677 ~ 9427542 (+)
AMCG00000278 NA coding upstream 75585 9378563 ~ 9412332 (+)
AMCG00000274 pygl,LOC104938237 coding upstream 124483 9355981 ~ 9363434 (+)
AMCG00000273 trim9,LOC102776798 coding upstream 132769 9331536 ~ 9355148 (+)
AMCG00000271 NA coding upstream 330975 9121065 ~ 9156942 (+)
AMCG00000288 l2hgdh coding downstream 325 9501693 ~ 9508924 (+)
AMCG00000280 NA coding downstream 56150 9557518 ~ 9560476 (+)
AMCG00000283 NA coding downstream 187379 9688747 ~ 9705449 (+)
AMCG00000282 NA coding downstream 220522 9721890 ~ 9747008 (+)
AMCG00000293 NA coding downstream 326721 9828089 ~ 9840429 (+)
G149253 NA non-coding upstream 202766 9280063 ~ 9285151 (+)
G149172 psmc6 non-coding upstream 471766 9013371 ~ 9016151 (+)
G149059 NA non-coding upstream 814131 8668980 ~ 8673786 (+)
G149056 NA non-coding upstream 902950 8584488 ~ 8584967 (+)
G149055 NA non-coding upstream 903910 8583648 ~ 8584007 (+)
G149359 LOC103376870 non-coding downstream 218579 9719947 ~ 9776988 (+)
G149416 slc39a9,LOC107721951,LOC107664419 non-coding downstream 456345 9957713 ~ 9962571 (+)
G149415 NA non-coding downstream 471680 9973048 ~ 9975172 (+)
G149450 NA non-coding downstream 520054 10021422 ~ 10021853 (+)
G149454 NA non-coding downstream 528326 10029694 ~ 10030786 (+)
AMCG00000285 map4k5 other upstream 1228 9440061 ~ 9486689 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other upstream 902644 8579717 ~ 8585273 (+)
AMCG00000251 NA other upstream 912793 8572936 ~ 8575124 (+)
AMCG00000217 gpx2 other upstream 2125210 7359278 ~ 7362707 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other upstream 2163466 7313872 ~ 7324451 (+)
AMCG00000286 sos2 other downstream 13454 9514822 ~ 9546411 (+)
AMCG00000281 cpsf2,LOC106608196 other downstream 60189 9561557 ~ 9591088 (+)
G149424 NA other downstream 467956 9969324 ~ 9970801 (+)
G149525 LOC100846954,LOC107575789 other downstream 1033222 10534590 ~ 10535137 (+)
AMCG00000352 NA other downstream 2464187 11965555 ~ 11995026 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006808 cdkl1 coding NC_007124.7 CM002897.2 36693152 ~ 36703164 (-)
grasscarp (Ctenopharyngodon idella) CI01000012_05067336_05074406 CDKL1 coding CI01000012 null 5066928 ~ 5074539 (+)