AMCG00000810 (ddx18,LOC107673737)


Basic Information

Item Value
gene id AMCG00000810
gene name ddx18,LOC107673737
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3934797 ~ 3941315 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000810
GCTGCGGggaacagcagcagctcctGTTGGGTCCTTCGTGTTTCTGCTCAGGCAGTTGAGAAGGGCGCCTGTGTGCTGGGGTCCGCGCGTTGCGCACACGTGTGTGAGGAGAGTCTGCAAACATGGCGGATCTGCAGATGAAACTTCTGAGGAAGAAAATCCAGAAAAGAAGCGACAAGAACAAGAAGCGCAATTTATTGAAGAAGCAGAAGCGTGAGGATGAGGATGAAGAGTGTGACCCCGCACTGTCGGCGACGTGCCCTGACACACACGATGAAGTCGAAGACCAGTCGACTCCAAAGCCCGTGAAGaagctgaagaaaaagaaactcaTGGAAGCCAACGCAGTTGCCGGGACCCCAACTTAAACCGAAAAGCCCAAGAAGGTCAAggagcaggaagaggaggaggaggaggaaggggacaGTGAGGCTGCTGTTGAGAACGTGGAGGGCTCAGCCGACGAAGAGTCTGAAGATGGAGAGGACGATCAACCGCAGCTGCCTCTAGGGCTCACGGGCGCGTTTGAAGACACTTCCTTCGCCTCCCTGTCCGATGCGGTCAGCGAACACACACTGAAGGGCGTCGTAGACATGGGCTTCGAGCACATGACCGAGAtccagcacaagagcatccggCCCCTGCTGGAGGGCAGGGACGTGTTGGCCGCCGCCAGGACAGGCAGCGGGAAAACCCTGGCCTTCCTGATCCCCTCCATCGAGCTGATCTACAAGCTGAAGTTCATGCCTAGAAATGGCACCGGAGTTGTCATCCTGTCTCCCACCCGTGAGCTGGCCATGCAGACCTACGGGGTGCTGAAGGATTTAATGACCCACCACGTGCACACGTATGGTCTGGTCATGGGGGGCAGCAATCGCTCCGCCGAGGCTCAGAAGCTCGCTAACGGAGTCAACATCCTGGTGGCCACACCCGGGAGACTGCTGGACCACCTGCAGAATACCCCAGGCTTCATGTACAAGAACCTGCAGTGTCTGATCATCGACGAGGCAGACCGCATCCTCGAGGTCGGGTTCGAAGAGGAGCTGAAGCAGATCATCAAACTCCTGCCCAGTAAGTGCGGTCCTTTAACGCCGAGCCGTCGCTCCGGCCTCGATACGCGCAAAGTGGAAGACCTGGCTCGGATCTCGTTGAAGAAGGAGCCCTTGTATGTCGGGGTGGACGACAACAAGGAGACAGCGACTGTCGACGGTCTGGAGCAGGGTTACGTAGTGTGTCCCTCGGAGAAGAGGTTCCTGCTGCTCTTCACCTTCCTGAAGAAGAACCGCAAGAAGAAGCTCATGGTGTTCTTCTCCTCCTGCATGTCCGTCAAATTCCACTACGAGCTGCTGAACTACATCGACCTCCCTGTCATGGCCATTCACGGAAAGCAGAAGCAGACCAAGCGCACCACCACCTTCTTCCAGTTCTGCAACGCGGACTCGGGCATCCTGCTGTGCACGGACGTGGCCGCCAGGGGGCTGGACATCCCAGAGGTGGACTGGATTGTGCAGTACGACCCTCCCGACGATCCCAAGGAATACATCCATCGCGTCGGAAGAACCGCAAGAGGCATCAACGGCCAGGGACACGCCCTGCTGATCCTGAGGCCCGAAGAACTGGGGTTCCTCCGCTACCTCAAACAAGCCAAGGTCCCTCTGAGCGAGTTTGAGTTCTCCTGGGCCAAGATCTCGGACATTCAGTCACAGctCGACAAGCTGATCGAGAAGAACTACTACCTGCACAAGTCTGCGCAGGAGGCGTACAAGGCCTATGTCCGTGCATACGACTCGCATTCCCTGAAGCAGATCTACAGCGTCAACACCCTGGACCTGCCCAAGGTGGCCATCTCCTTTGGGTTCAAGGTGCCACCCTACGTGGACCTCAACGTGAACAGCAGCAAGGGCGTGAGGATGCAGAAGCGAGGTGGCGGAGGAGGGTTCGGGTACCAGAAGACCAAGAACGTCTACAAGTCGAAGATCTTCAAACACGTCAGCAAGGGCCGGACGGACAGGAGGCAGTTTTCCCGCTGAGGCCCGTCATTTTATATTGGAGCgagaaaatagttttgtttttttacaggagaagattaataaataacctGATGCCGTATGAAAGCGCTCTGCCGTGTTGACGTGCAATTCCCCGAGAGAGACGATCTGCTCGTACTGTCCGTTTATCCGTCGGGAGCGTTCACTCTTTCTAGTTATTTAATTGGTAGTTTTCGAGATGTGTATCTTAAAACCGCTGTAATGTTTCTCTGTCCTcttttgttctgctttgtttccgcaagaataaaaaaggaaaaacttgcCAAACTACATTTCCAGCGTCTCCACATGTATCCAAAGAGTTAATCCTTCAGTTTATACTTTATACTGCAGATATTTTATAGCATGCTAATGTTACACACCATTTTTAGGAGACTTAATTCTCATTTAATTGTACATCCCTCCTCTGTTAGTAATTTTACATTGTGTAGTATACTATGTGTTGATTATGAACTATAAGAATAGTTTCATCATGGGATACTGGATTCATTGTTTAAACAGactaatagaaaacaaaaattgttTTTCACGTTGTAAATCTCCGCTATTGTAGAAAAGGTACCGACAGGCCAGAGTTATAAGAGTCTAGAAATGGTATTgtagtattttattcata

Function

symbol description
ddx18 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Acts upstream of or within myeloid cell differentiation. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; intermediate cell mass of mesoderm; nervous system; and trunk vasculature. Orthologous to human DDX18 (DEAD-box helicase 18).

NR:

description
PREDICTED: ATP-dependent RNA helicase DDX18

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000810 True 2664 mRNA 0.52 14 3934797 3941315

Neighbor

gene id symbol gene type direction distance location
AMCG00000809 htr5a,htr5ab,LOC107684958,LOC107550720 coding downstream 1497 3930277 ~ 3933300 (-)
AMCG00000811 insig2,LOC106582059 coding downstream 39846 3891023 ~ 3894951 (-)
AMCG00000807 NA coding downstream 189242 3720413 ~ 3745555 (-)
AMCG00000802 NA coding downstream 267346 3662247 ~ 3667451 (-)
AMCG00000801 NA coding downstream 283939 3650316 ~ 3650858 (-)
AMCG00000813 NA coding upstream 126629 4067944 ~ 4088896 (-)
AMCG00000818 actr3,LOC107660280,LOC106575261,LOC104923131,LOC101155832 coding upstream 375703 4317018 ~ 4326577 (-)
AMCG00000817 NA coding upstream 439300 4380615 ~ 4387720 (-)
AMCG00000821 NA coding upstream 460424 4401739 ~ 4404141 (-)
AMCG00000820 NA coding upstream 488432 4429747 ~ 4464744 (-)
G126296 NA non-coding downstream 257870 3674281 ~ 3676927 (-)
G126275 NA non-coding downstream 381820 3550840 ~ 3552977 (-)
G126037 NA non-coding downstream 1376548 2557991 ~ 2558249 (-)
G126005 NA non-coding downstream 1414577 2427941 ~ 2520220 (-)
G126369 NA non-coding upstream 303414 4244729 ~ 4245041 (-)
G126428 NA non-coding upstream 696052 4637367 ~ 4637640 (-)
G126429 NA non-coding upstream 696643 4637958 ~ 4638285 (-)
G126430 NA non-coding upstream 699743 4641058 ~ 4641341 (-)
G126432 NA non-coding upstream 701365 4642680 ~ 4643466 (-)
AMCG00000804 NA other downstream 278236 3553047 ~ 3656561 (-)
G126096 NA other downstream 785545 3131714 ~ 3149252 (-)
AMCG00000777 coq10b,LOC107690612 other downstream 794308 3133876 ~ 3140489 (-)
AMCG00000771 nabp1,nabp2,LOC106581684,LOC107718374,LOC106575791,LOC107557546 other downstream 884781 3044167 ~ 3050016 (-)
G126089 NA other downstream 892833 3036931 ~ 3041964 (-)
G126427 NA other upstream 694781 4636096 ~ 4636516 (-)
AMCG00000838 cacnb4,LOC108434427 other upstream 1015823 4957138 ~ 4982651 (-)
G126700 NA other upstream 1631390 5572705 ~ 5573027 (-)
AMCG00000888 LOC102209482 other upstream 2748253 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 3688600 7629915 ~ 7645722 (-)

Expression


Co-expression Network