AMCG00000820


Basic Information

Item Value
gene id AMCG00000820
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4429747 ~ 4464744 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000820
ATGGAATCCCAGCAGAATGTAAAACCTGGCGTCCCGGTCGTGAAGTGCCAGAGTCAATTAAGTCTGACAGTTCCCACTCAACTGTACCCgcgcagcagctgcagcagcagcgaACTGTCCCTCTCGAGCGCCTGCAGCGAGTTTTCCAGCGGCTCCTACACGTGGAACGACGGGAAGTCGTGCAGCAGAGTGTCATCGCAGACCTGGGAGAAGAGAGTCAGTATCGGCTCTTCGGCACCCAGCAGCATCTCCAGTCCCGCGGAAGAGCAGCCCCCCACcaggaagaaagaaagtcaCATCCTCGAAGGCCTCAAGAAGCTTCAGAAGAGGAAGCCAATGGAACCATCTTCTCTCATATCGAAATGGGGCTACAAAGACTGTATGAACTCTAATGAGGGGATCTATTCTCCTGGCGTAAAGTGTGTGGGGAGAGGCGTCCCCAAATCCCACACGCCCAGCAAACCCACGGGACTGTGCCCGAATCGCGAGCATGGGAAGAAGTTCACCTACGACTCCGACTCCCACGATGACGCGGATGACGAATCGACCAACGCTCCTCCTCTGCGGCACGAGATTCCCAGCAAGGACTGCCGGACGTACTCCAAGAAGCTGACCCACAGCATCTCGGATAGCCTCTTCAGCTGGGAGCAGCGCGGGAAGGTGGCGACGGGGAATCCCTCTTACTTCAACTCGAGAGAGAGGCCGGAGAAACTCACGAGCTTCATCAACGGCTTCCTCTCGGGGGAGAATAGTCGCGCGATCCTCGGCCCGCCCGTGCTGCGGTTGGAAGCGAGCCCCACCGAGATGGACTGCAACCTCCAGCTCTCCGACATTGACGATCTAGAAGTCCTGGAGGAGTTGCGTATCGAGAGCAGCGACGAGAAAAGCACCGCGGTGACCCGACTGGCTGAGAAACAAGGGAGGGAAGCAAAGAGGCTTTCAGGAGaaatagacaaacagacacTGCAATGTGAGAAGGATCAAGGCAGACTTCAGCCACCAGACATCAGGCCAAAgacttttaatttgataaagCAGCATAAGATAGTGAAAAATACGTCGTCTGAAGAATGTATTACTGTGATATTTGATGCGGAAGACGGGGAGCCCATTGAGCTCAGTTCACAGCAGACTGGAGTCGTCTCTGTGACTAGAAATGAGATTTCTGTGAACCAGCAGCAGAGCGTAGCCAGTGCTGAATATACTGAGCTGATACCTCAGGGAAGGTCTAATTGTCAGAAAGGAAGCAATGCAAGGAACTACAGCGTCTTAGAATCCCCAGAAAGCCAAGCCGAGCAACAGCCGGACAATATGGCACATAAAAATGCAATCCTCCCGAGTGCGTGTGCTGACGCGCCTTCTGAAAGACTGCcaacgcactttcccaagccacagaaattaataaaacccTCTTACAATAGTACTCATAAAATTAATCCTGTCTCTCCTATGCACAGTTCTTCCAGTCAGAAGGCAAACCTGACCAAAATACCGAGCCGAGGAAAGGGCTCCCCGCAGAAGGTGTCCAAAGCCTCTGTCAATGACACCAGCAATAACAACGGGACCTCCAGTTCTGCATTTCAGGAGAAGTCACCTTCTTCTCCTCCTGTCAAGCTGTCCAGGTTCATAAAGCCACCGGGTGGCGGTTGTGTCCAGAACCCGAAAGCAGAACCGGGGGTTTCAAAGCTCAATTCGCAACCTCAGCAGAGCTCCAAAATCCCCTGCCGCAATGAGTGGGGAAAGGGCTCTTCCACCACAATGCCGGGCTCCCCTCTGCTACCCCGGCGTCACTTAGAGCCGGTTGACTATGGAGAGCAACCGACGAGAGACAGGCACTGTGACTCCGCGCACACCGAACTCAggtctccctcccctcccccgccGCCGGGCCGCTCGGCTTCCTTGCTTATACGACCAAACTATGAAAATGCACCCCTAGCACTTAAACCTCACCTCCCGGCATCAAATGCTTTAAGAGGAGGCCCTCCCAGTTCTCAGATGCACCTCCACCACCCCTTGCCTCTACCTGATACGCAGCATCCAAACCCTCACAAGAGTCCAGACTCGGCAAGTCTTGATGACGGCCATTGTCCCGAGATGGCACCGCAGAAGCTTGTGGACAACGCCAGTCAGCACCTGCAGAGGCCTCCGGGGACATATCAGACCCCGACAAAAGGGTCGCCCAAACGGGTTCCAGCCAAACTCTACCATCCTTCTCCTGCTCCGGGATGTGTCTCCGATTTCTGTGAAAATGCATCAAAAAGCTCAAAAGTGCACAATTCTCAGAGAGGCTGTTCACTACAGAGCGCCTTCTCCACTAAGAAAGGGCCGTCCTGTGAGAATGGCTTTCCTCTTCTGTATAAAACATCGAGCAGCTTGCCGATATCACTTCAGGGTCACTCACAGACTATTCCTGAAGCTCACGGGGTTCAGACACATCCCTCCCCGGTGACACGGACCTCACCAAGCACTGGTGTCAGCCTTCAGAACTCGGAAGAGAAGGTCTCGAAGACCCGTATCCCCATTGGCCTCAAAGCCTTTGTTAAATCACCGCCATTGCTGAGAAAAAGCTCCACGGTACCAGGAAAGCAGGAGAAAGACAATATCAATTCAGCTTCCAGAGGCACGGTGACATCAAGCAACTTTAACAACTGTGATGCATCACAGGGAAGCAGGCACTTTGAAATGGTGAGCGCAAAGTCTGACCAGGAGATCAAGACCGACATGCTCGGCAGTCCCACGAGCGGAGAAACGCATTCGTTGGCGTTATCTGAAAACGGCGGCCCTTTTTTTGATAAAGGCGATGGTGAGAGTAGACTGTTCAAGAGGTCGGTTTCGGTCACTAATAAAACCCACCTGAAGCCAGCGCTGGGGATGAATGGAGCCAAAGCTCGCAGCCAGAGCTTCAGTACACATTCTGGGGAGAAACCATGCACCAACGTCATGGATGGTCCGGGTAAGATTCGAACGCAGATCATAACAAACACGGCCGAGAGAGGCAACTCCTTGACCAGGCAAAATTCTCTAATCGACGGTTTCCAGCTGAAGCCGGGCAGTGGTCCGTGTGAAAGTCCATCTCACTCTCCGAGAGGGGTCGATTGCTCCTATAACAGACAAGGCTCTCATGGGAGTATGAGCAGCTCAAGCAGCCACCATGGCAGTCCAAGTAAAATAGCCTCTCGGACCACTCCGAAGGGCGACAGCACTAGAAATGCATCTAAGGCTGATGGAAGCAAGTCTCCACCCCAAAAAGAAGCACGTAGTCTACCTCTCGCCGACAGGTTCGGACTTAAAAACTCAAGACAACCTGTTAAAGTTGCGTCACACCCGCAGTTTCATATCGTGACATCGCCCGTCTTTGTCCCGGAGATGTCAGCAGAAGCTGTTGGGAGCAGGTTGCTAAGCCCGAATAAACTTGAGATGATCAGGCCTGTGAAAAACCAGGACAACCCCAGCAAAGCACCAGAAGTACCGGAAAAACTCGTGAGTCCCTCGGTGTCCACGATAGAAGAGAAAGTCATGATGGGCATCCAGGAGAACATGCAGAAAGGCCATGGGCAGGACAAGACGCCAGCTTCCGAAACCAAGCAGAAGACCGGTCCATCGTTGGCCAACTGGTTTGGCTTCCGGAAGAGCAAGCTCCCTGCCCTGAGTGGCAAGAAGGCAGACGCGTCCAAAGCAAAAGACGAGAAGAAGGACCTCAAGATCGGATCAGTATTAGGAGGGAAGCAGGTGAAGGCCGACAAAAAGAAAGATAAGAAGAAAAACGAGCCACAGTCTAAAGACAGTCAAGAGCAGACAAAGAAGTCAGAGAATGGAGATAAACTGGGTTCGATCATTGACCATTGCAATAGCCAGATGGGACAACCAGGGAAGCTGATCCAGTGTTCGACTACATGCATCGGGAAGGAGCAGTTTATGAAGGAGCTACTGAACAGGAGTGTGTCGAAGGGCAACTCCCAGGGCCCGGCTCTGCCCGGCATCTCCATCAACGCCCAGGGAAACTACAAGAGAAACGGCGAAATGAAGGGAGATATGGACATTCACAACGAAAGTGCGAGCAAAATCATGACACAAACGATCAACATTATCACCGATAATGACGAAGAGCCCACGACTGAGTCCACTTGTCAAGACCACATGATAGGGTCAAGCTGCCAGATGAGGACCTTGGACAGTGGGATAGGGACTTTCCCCCTCCCCGACTCCGTCAACAGGCCGACCGGCAGGCATCTGCCCAAGTCCGAATCCAGCCCCGAGAGGGCGCTCAGCGTTTCCCCCGAGCCCGCCGACCATCACCCCCTACCCACGCCGCCGAAAGCCAAAACTGTAGATCGACAAGTGCCTTCTGACTCTGGAGCCGGCCACCATAAGCGCAGCGACATGGGGCATTCCCTCTCGGACTCCACGATGATTGCCACCGATGGATACGTCTTCCAGAGCCAGCTCCCCCTGCCCACCGCCTCAGGCCCGATGAAACTCCGGAGAGCGAGTGAACGGGAACACGGCTCGGTCTCGGCCCAGACTCCTGGTGACTGCGAGAACCGAGCGGAGGATCTCAAGAACCACAAGGAGCCGCACGGCCTGCACGCGGACAGGACGCTACGAGTTTGCACATATccaggcagcagcagtgagagCGAATCCGAATACGAATCGAGTGAGAACAGCTCTTGTCGTGACACGCTGTCGGACCCCATGAAGAACAGCAGGCAAGTTGCCCCAGATGAGCCAGTGGTAAAGAAGAGCATTGTGGCAAACCCCATGTCCATTATGGATTTCTACCACGTCCACTTTGGGGAGGAAGCGCACAAAGACGTCTCGCAGTACGGTTTTATGCACAAGGACTCGAGCACCGAGGGGAAGACTGAGGAAAGCCCAAATAAAACTAAACAAGCGGAAGAGAAGCAGGAAGAACCCAAGATGTCCAGCTTCTCTAAAATCTCCCTGGAGTCCCTGAACAAAATCAACAGCAACAGTGGGATCTTCGCGGAGAAGGACAGGAAGACAGGGAACAAGGCCGAGGGGCAGCCGGAGGGCCGTGGCGGGACGGAGGAAGCCTCTTCGAGCTGCTCCGATAAGCCCGGCCTGGAGTCACTCAGCGATTCGTTGTACGACAGCTTCTCCTCGTGCGCCAGTCAGGGCTCGAACGAGGTATAGAAGATATAGCGACTCGGAGATGCCGACCGAGCACCGATGTCCCTACGGAGCACTTAAATTAGAAGTCATAAAAAGGACAGAAGAATCCAGGGTTGCAGGATCGAAGGCACGATAAGGACAGAGAGGCCCGTTTTCAATGTACGGACAGCAATACTGTTAGACTGCGGTTCATGGCAGAGTAACATTGAGAGAGAAAGTAATAAGTTGCAACATTGCACTGttataaatactgtacaaaGATGTGTGTAAAGTTAAAGCGAAATATATTTGTAGCAAAAggaataaaagcaatacattttatgtCGGGTTTACAGATCTGTCGTAAAGTATAAATGATTCAAAGATATCGACTGCGCCGTTTGTTAGCTTATCagtaaattagttttaaattatacatatagaTACGGTCTGACAAAGAATGGGATTTGACAATATAGGGAAACCTCTGTGTtgttgtggaaaacaaaatgcatttgacagGAAGATGGAACGAGTAGAATTACActctttagttttatttatgtatctgtttatatatatatgttatgcaCATTTGTACAGGGTGCAATCAAGAGGACAGTATCGGTACAGATCAAAGACAGgactgcttttaaataaattaatagaaatgaCTACAAGCTGCTGTTATTTGTAAACTGGAGTTTATTTTCACATCGAAGGCCAGGTGGTTTCCAAGATTGTTCAATggtaaaaaaagataaagaaaaaaacattcctttGAACATGAAATCAAAGCAGAGATACCACCCTCTTTTATCGtggaaaacagaataaaagaatgtgaaaaaagGCTTCCAGCCCTGAACGATTGTTGACAGTTGTTGTTACATATTGCTGTCATCCAAAAGTATTAAACCAGGCTggaataaacagaaatgtatgtgCAGCTAAACTGGGGAATAacatcacaaataaatatatatagtcataTAAGTCTAACTAGcatgcatttcttaaaataatcaaacacaaaaaataagcaCTTGTTTTCCACAACAACCGTGCAGGATTTCAAACCGAGTTCCTCCACTCTTTCTTGATTGTTAACTTCATTTGTACGTCTGTTGCGTATGTAAACAGTGCTCTTTGAAGTGTTGTTTGTAGACGATTCTGCTGCGAGATCAGACACCGGCACAACATAGAGATcttgaaatgttatttaaaagaaacGGTTTGCAAACTtgatcattttctttctttttgtatggttttgtgtctttttttttttttttacagaggaACCTCAAAGTGTCTGTAGAGATTGTAGGcataaaaacagatattttattgatgttCTGTAAAATCTACTGGCACAACCTTCATCACCTTAACACTGTGTTGTGGGGGATTTGAAAAGTCCGTGTCTATACGGATCACTTTAACTGGGGCTAACAGATGGGAAGCAAACTGTATTTCTCGTTTCATGTTTTTCTATGAAACTTTGTTCATATGTAAGGAGAGAGTCTATTTCAAAAGACAACTGTATTTTTCTAGCTGTGATGTATTTATACCTACTTTTGTAAATGGAGCTGTAAAgtagtgtatttgtattatttctgattTTTCCATACTTGTTAAGGTTTAAGATACAATGGTACCAACAGTGTTACTTTGGTAATAAtttgtgcaatttttttttgctgttacaTTAGAACTTTATGCCATATGTTATGTAATGATGTTGTCAGAGATACGATTATTTCaaattttttcagtttttaaaaaaaccATTGATTACACTTCATAAAATGAGATGCTAGTTTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000820 True 6947 mRNA 0.49 10 4429747 4464744

Neighbor

gene id symbol gene type direction distance location
AMCG00000821 NA coding downstream 25606 4401739 ~ 4404141 (-)
AMCG00000817 NA coding downstream 42027 4380615 ~ 4387720 (-)
AMCG00000818 actr3,LOC107660280,LOC106575261,LOC104923131,LOC101155832 coding downstream 103170 4317018 ~ 4326577 (-)
AMCG00000813 NA coding downstream 340851 4067944 ~ 4088896 (-)
AMCG00000810 ddx18,LOC107673737 coding downstream 488432 3934797 ~ 3941315 (-)
AMCG00000825 LOC107714772,LOC106574437,LOC104928565,LOC106575257 coding upstream 182217 4646961 ~ 4651113 (-)
AMCG00000824 NA coding upstream 204524 4669268 ~ 4683641 (-)
AMCG00000836 NA coding upstream 399456 4864200 ~ 4938788 (-)
AMCG00000835 arl5a,LOC107555355 coding upstream 479473 4944217 ~ 4954174 (-)
AMCG00000839 NA coding upstream 549625 5014369 ~ 5024891 (-)
G126369 NA non-coding downstream 184706 4244729 ~ 4245041 (-)
G126296 NA non-coding downstream 752820 3674281 ~ 3676927 (-)
G126275 NA non-coding downstream 876770 3550840 ~ 3552977 (-)
G126037 NA non-coding downstream 1871498 2557991 ~ 2558249 (-)
G126020 NA non-coding downstream 1967259 2460715 ~ 2462488 (-)
G126428 NA non-coding upstream 172623 4637367 ~ 4637640 (-)
G126429 NA non-coding upstream 173214 4637958 ~ 4638285 (-)
G126430 NA non-coding upstream 176314 4641058 ~ 4641341 (-)
G126432 NA non-coding upstream 177936 4642680 ~ 4643466 (-)
G126445 NA non-coding upstream 238395 4703139 ~ 4708851 (-)
AMCG00000804 NA other downstream 773186 3553047 ~ 3656561 (-)
G126096 NA other downstream 1280495 3131714 ~ 3149252 (-)
AMCG00000777 coq10b,LOC107690612 other downstream 1289258 3133876 ~ 3140489 (-)
AMCG00000771 nabp1,nabp2,LOC106581684,LOC107718374,LOC106575791,LOC107557546 other downstream 1379731 3044167 ~ 3050016 (-)
G126089 NA other downstream 1387783 3036931 ~ 3041964 (-)
G126427 NA other upstream 171352 4636096 ~ 4636516 (-)
AMCG00000838 cacnb4,LOC108434427 other upstream 492394 4957138 ~ 4982651 (-)
G126700 NA other upstream 1107961 5572705 ~ 5573027 (-)
AMCG00000888 LOC102209482 other upstream 2224824 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 3165171 7629915 ~ 7645722 (-)

Expression


Co-expression Network