AMCG00000835 (arl5a,LOC107555355)


Basic Information

Item Value
gene id AMCG00000835
gene name arl5a,LOC107555355
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4944217 ~ 4954174 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000835
CGAGTACAGGCTCAGTGGCACTGCATAGAGCTCTGCTGTCtgtctccacacacacacacacacatatatatatatatatttaagtcgGTTTCTCGTTGTAACACAACCCGAGGTCCTCTCCTGTGCTCAGATTATGGCTCCGCACACTTAGGCCACGACCGGGCGCGGTGTCGACGATGTCTCCCGGGGATATTGACACCTCTTTCCCCCGCGTTACCGTGAACCGGAGCCAGGTTGTCCATCCGGGCAGGTACTGAGCAGCGCGGCGCCTGTGCGGTGGCTGTCGTCCGGCTGTCTGCGCCGAGCTCACGCTGTGGCCGAGGCTGCAGGCCCTCGTCTTGGCCATGGGGATCCTCTTCACCAAGCTGTGGAGGCTTTTTAACCATCAAGagcACAAAGTGATTATCGTGGGTTTGGATAATGCTGGGAAGACAACAATACTGTATCAATTTTCAATGAATGAAGTCGTGCACACCTCTCCGACGATAGGCAGCAACGTTGAAGAGCTCGTAGTCAATAACACCCATTTCCTCATGTGGGACATCGGTGGGCAGGAGTCTCTGCGCTCGTCCTGGAACACCtactacacaaacacagagTTTGTGATCGTAGTGGTggacagcacagacagagagaggattTCTGTCACCCGAGAGGAGCTCTACAAAATGTTGGCTCATGAAGACCTTAAAAAAGCAGGGCTTCTGATCTTTGCTAACAAGCAGGATGTCAAAGGATGCATGACCGTGGCTGAAATCTCCCAGTACCTCAAGCTGACCTCAGTCAAAGATCACCAGTGGCACATTCAGGCCTGCTGTGCCCTCACCGGCGAGGGACTTTGCCAAGGCCTAGAATGGATGATGTCGCGACTTCGAGTCAGATGACCTCCGCTGTCATCTTAGACGGActtcttttttctcctccttttttCTCCCTATGTACGAGTTCGCACTTACCAGTCTGTCAGGATGACATTGGCCCTCCGTGGATGTGACGGTAATTTATTGCGTACTGTGGCTCGACTCAACAAAACACTTCCGTTACGATTTCAGGTttgggaaaaactaaaaaattgaaaagaaaatggagcCAAATGCTGCGACTGAGAGGATGGTTTAGCCTTGTAGTATTGATTACGTATCGGAGATAGTATTGGCctttatgtacagtatttagCATTACTTTGTGCCTGCATCGGAACCCCTCAATCCCAGACGAACAGgagaacagaacaaaagcaaagcaactCTTGATGGTCCTGtaaagtataattaaataaagcctTTTTATGTGTTATGGGTGCACCCAGCTTTGTGAAACTTTAGACAAGGCAGGTAAGTTAATTTAATCCATGTAAATGTCTTCAATTCTATGGGAGTCTTCCTGTGCAAAGTTATGGGGGGCAAGGCTCGTATATATTTTCTACGTTTCATGTTTCAGAGGGATCTTGGTactttaaacaaaagaaaaataatccaaaCAAGTGTGATTTATGTGGTGGCGTGGTACATTAACACTCTCCTTTCTGTAAAGATATTTTGATATGATGAATAACAGGTAGAACAATAGGTTTGCAAGATGatgtttttgttacctgcgtaTGTATGGATTTTCTGACGTTGATTTCAGGACTTGACGGCTACTTGAAGTTCTGAagaatgttttgttatttgtatcgACACACTGTATCTTTCTGTGCATTATCAGCTGCTGCGAATGTTAGGTCGGAGCTTCAGTGGACTCGGACTGTGCTGCCATTTTGTAGTCGTGAGGAAATGGCTAGCCAAGGTCTCTTGTTTACATAATTTTAAGAAgcatttcaagtttttaaatctCCCCTCAGAACCTAGCACCAGTAACCAggaaaaactttattttcatttttttgtctaGTACAATAAAAGAGGGATAAAAAAAGGCTTTGCTACTGGGATAGTCAGGAGACTGCATTAAGTAGGTGCAGTCTTCCTATTTATAAATATCTCTTGAGAGCTTGACTGTGTGTTTCTCTTACACATCTTGTGTTCTGGGCTAAAACAGCTAATGAGCTAAAGTCTCTTACTAATATACATTCATCCAGGTATCCCATATGTCTTAGAAAACAAGAGAAACTGGGACAATTCATTTTGAGGCCTGGCTAAAAATGATGATAGGAGAAAAGCTGACAGAAGAGTGACCGTTTATAGTAACTGAAGGACTGAGGTATACAGCTGGCTATATTCATGTTTACATTGAACTgccaaatacattgaaaagtaTAATGCTTTAAACAATGTGAAGGGGCTGAATCGGGCAGGGTGTGAGGGAAGATGCCAAGGCTTTATCTGGGGAGGAGTAGGGGAACCCGTCTATTCAAAAGATCTTAGTCTTAACCTTTCtctctaaaaatacatttattttctgaactaaaaaaaagaataaacaccCCTCAAATGGCAAACTCTCTTCACTTttaacaatcaataaaacaaatcaattaaactgAAACTTGAAAGCCTATGTGGTATTTTCCTTGGTAGATGCACACCAATCTATAGAGCTTCGCCATTTCTCTTGGGGAAGGGAAAACGACAAAGAGAGaacctttttatttaatggtacactgtgttttgcaattaaaagaATTGGTTTCAGTATATGTCCTGGTTGGAAAGGGACCGTTTTATCTGGACAGGCTGGGATCTTTCTCCATTCTCATCTGGGGAAGATTAGTCTTAAATATCTCAATTTCTCACTTTCTTTCCCTGTTGATCCACCTGAATAAAGCAAAATGAATCATATTTGGCTTCGCTCTTTGCAAACAGCATTTCTGAGACTACTCACTACACTTAAGACTTTCTCAGCTCGACGCTCTAATTGAAGGTCCCCTCGTCATGGAATCAAAGTGGTGATTTATGCATGCTTTTTTAGTTGTACCATTTTGAAGAAGGCGAATGGctatttattactttaaattTTTACCTAAATGGGTGTAAACGTGTCTAAACTTGCTTAATACACTTTCCAGTTTCAACCTTCACATTGTGGTGCTGTGTCTTTTACAGAGCCTGTgactttttttctgtgttgtattCTGGGAAACGTTTTCTTTTTACATCCTGATTCTTTGAGGTGGTAAAACAATTAGTGATTTCCTCCAGAATGAGTCATGGTTTCAGTTTTCCATGCCCTGGTTTGCCTCTAGTTATAAACCCCTACCCCTTGGTCTTTTGTATcctcttaatttgttttgattgtggCTCAACTCCCATCAGCTTTTATGAGTGCTTGTTTACAGTAGTTCTCAAAGCAGATCCATTTTAATTCTTCGGCTCTGACACAATGCTTTTTCTGTCATTTGTCctatttttttgtcttgaatCTTGTAGTTCTGTACaattataaacttttttttgtgtgtagatGTGTTTTTTGCAAAGCTGTGTTCAAGTACACTTGACTTGATTTGGGTTTTCAGAGCAGTATTAACTCCCTTTCAAACACATACTGCATGTTTAGTACCGTGAGCATTACGAAACCCTGAATTGTTGCCttattacaatttaaactgCAACCTCGCTTCTGACTTGTCATCTACTGTACTGACGAATATATTGAGAGCCCttatttttgtacatgtatCACAACCAAAAACATGGCTACTGATCAATACCCCTCATCTGCTACATTGATTTCAAGATTATGTATCTTTATATTGAGATTCATTATTTCAATACAGTACTTTAATTTCCTCAAGTTTTTTGCCTTTAATTCTCCTGCCTGATAGTTTTAGGGTTCATGCCGCGTGGGAACACTCACAGATTGTGAGATGCTGTGCATTTTCACATGAACTGGGTGTAcatgcctctgtgtgtgtgtgtgcgtgtacgtgCCTTTGAGTGTTCTGGACTTTCAGATAAGGTAAGCTTATAGTGTTTCTTAgagtatacattttctttgttttatacacTATTAAACCAAAAAGCATGACAAAAGGTAATGTGATGTACATAAGtatccatttaaatacacaacttGAACATTGGTTTGAGATGGAGTCCATTAatattgaattttttttaatttattttttttaacattcttaAGCATAATAACTTTtgcttttgtcttgtttttattatggtttgttttttgttacaaatcaaatgttaattattgtatagTACCGAAGccccaaatatttattttctatgctCAACATATATATGGGGACAAACAAACCATATAGGTTGTGCTCTATTAATTCAGATGACTCAATTTCAATCCTGTTATATGAaaattggattttaaattgtgtatttattaaaaggCAAACTGAGGGTTTGCAGAAGTCTTGTAAATATATTTCCTGACtgtgaaaatagtttttttttttttttttttttataaaataagcaTAACTAAAATGTCTGAAGCACTGTTACTCTTAAATAAAGCTAATGAAAGTGGAAAAAGTTTTACTAATGGTTTAAAGCAGTGACGACTGAAAATCACTGTGCTTTTACTGTGTAATTATATTCAGTTCAATTTAATGATAGTGGTCTTTTCACTTATTGTGTGTGATGTTTGAGGAATGAATGAGAAACATGTAATGtgggtttgtgttttatgtatataagCTACACTTTGTTTGTTACATAACTGGTTATGTTTTGATGCACTTATTTGGGtaatgttcaaaataaacacatttctgttaagtgATTTAGCCTGATGCATCATTATTCTAGGGCCTCTTGCACAGATGTTCATTTCAGAGTTTCAAAGATGATGCTTTTAAAAGGGAGAAACAGGATTTAGAGTAAataggatttgtttt

Function

symbol description
arl5a Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport; protein localization to Golgi membrane; and vesicle-mediated transport. Predicted to be active in trans-Golgi network. Orthologous to human ARL5A (ADP ribosylation factor like GTPase 5A).

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 5A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07949 ARL5A; ADP-ribosylation factor-like protein 5A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000835 True 4819 mRNA 0.39 6 4944217 4954174

Neighbor

gene id symbol gene type direction distance location
AMCG00000836 NA coding downstream 5429 4864200 ~ 4938788 (-)
AMCG00000824 NA coding downstream 260576 4669268 ~ 4683641 (-)
AMCG00000825 LOC107714772,LOC106574437,LOC104928565,LOC106575257 coding downstream 293104 4646961 ~ 4651113 (-)
AMCG00000820 NA coding downstream 479473 4429747 ~ 4464744 (-)
AMCG00000821 NA coding downstream 540076 4401739 ~ 4404141 (-)
AMCG00000839 NA coding upstream 60195 5014369 ~ 5024891 (-)
AMCG00000842 sec22a,LOC107722877 coding upstream 166933 5121107 ~ 5132844 (-)
AMCG00000843 pdia5,LOC107596065,LOC107555900,LOC107661141,LOC107660642 coding upstream 183783 5137957 ~ 5174410 (-)
AMCG00000846 dirc2 coding upstream 325370 5279544 ~ 5316096 (-)
AMCG00000854 NA coding upstream 400212 5354386 ~ 5370155 (-)
G126476 NA non-coding downstream 166433 4773581 ~ 4777784 (-)
G126445 NA non-coding downstream 235366 4703139 ~ 4708851 (-)
G126432 NA non-coding downstream 300751 4642680 ~ 4643466 (-)
G126430 NA non-coding downstream 302876 4641058 ~ 4641341 (-)
G126429 NA non-coding downstream 305932 4637958 ~ 4638285 (-)
G126554 NA non-coding upstream 59694 5013868 ~ 5034697 (-)
G126563 NA non-coding upstream 161880 5116054 ~ 5119036 (-)
G126631 NA non-coding upstream 418075 5372249 ~ 5372459 (-)
G126665 NA non-coding upstream 508393 5462567 ~ 5464052 (-)
G126698 NA non-coding upstream 615770 5569944 ~ 5572133 (-)
G126427 NA other downstream 307701 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 1287656 3553047 ~ 3656561 (-)
G126096 NA other downstream 1794965 3131714 ~ 3149252 (-)
AMCG00000777 coq10b,LOC107690612 other downstream 1803728 3133876 ~ 3140489 (-)
AMCG00000771 nabp1,nabp2,LOC106581684,LOC107718374,LOC106575791,LOC107557546 other downstream 1894201 3044167 ~ 3050016 (-)
AMCG00000838 cacnb4,LOC108434427 other upstream 2964 4957138 ~ 4982651 (-)
G126700 NA other upstream 618531 5572705 ~ 5573027 (-)
AMCG00000888 LOC102209482 other upstream 1735394 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 2675741 7629915 ~ 7645722 (-)
G127292 NA other upstream 4464822 9418996 ~ 9419325 (-)

Expression


Co-expression Network