AMCG00000771 (nabp1,nabp2,LOC106581684,LOC107718374,LOC106575791,LOC107557546)


Basic Information

Item Value
gene id AMCG00000771
gene name nabp1,nabp2,LOC106581684,LOC107718374,LOC106575791,LOC107557546
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3044167 ~ 3050016 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000771
CCGGCGCGCAGGATGGAACAGTCGAACTTTATTTATCCACCCGGCGGCCGCACGTTGGCGCAGTCCGGGGCTTTGTGTAGAGGAGTAGGAGCGGCAGCGCGCACCCGCTGAGCagattaaactgatttaaattgGGCAGAAAAGGGAAATCAATCCGCGTAGGTTGTCGTGGTCGAAGTCTTAAACCAGAAGCAACACTAGCATTACTTCCAGGGCACAAGAAACAACCTCACAGCCATAGTCTCACAGTGTCACTGTACTGCTATATGACCAACTTAACCCGCTCACAAAGACCAGCCCGGCCTGAAAAGAGAGAAATGTGCTTCTCCACAGATATCACACAAGGCCTCCGTCTTCGGTAAAGCAGCGGAGACCCACTCAGGGATAACCCGATATAGCCCTCCGTGTGTGGAAGCGGCTCCCGGCTCTTCCGGGTGGCCGTAGAGAGACTCCGTGCGGCGGATACATTGTTGCGGCGGCGGACACACAGTCGCGGGTTTGTGCGGGAGCGCGGGTTCAAAACTGGGCTCAGTTTTATGATTCTGACCTGGTTGTCCTTTTTTACCGCCTccagattgtatttttatatcttttTAATCGTTCCTTTTCCGGTTTGTTTAAGTGATCAGGGTGAGGAAGTGAGCACAAAAGTGGAGATTAAAAAGCGAAAGTGCAGCCCTACAGATAACACTAGCGGGTGGGGGGTTGGTGTCCCCCTGCACATCTGTCCACTGATCCGGTGCATTACTAATCGGCTGCCCTCAGCTGTGGGCACATATTGCATTTCCCTCCTCTGGTGCCACACGCCCCGATGCTGCTCAAATAAGTAGCGTTTCTGTGAAATTGAGATCAGTTTTCAGATCAGCAGCAGTATCATGTCGAACCTCTCAAACGAAGCCGTTTTCTTGATAAAAGATGTTAAGCCTGGGctgaaaaatttaaatatcGTCTTTATTGTTTTGGAGATCGGTCGGGTGACCAAGACGAAAGATGGCCACGAGGTGAGGTCCTGTAAGGTGGCAGACAAGAGTGGCAGCATCACCATCTCCGTGTGGGACGAGCTGGGCAGCCTGATCCAGCCCGGAGACATCATCCGCCTCACCAGAGGTTATGCCTCCATATGGAAGGGCTGCCTGACGCTGTACACGGGCCGCGGAGGAGACCTGCAGAAGATTGGGGAGTTCTGTATGGTGTATTCGGAGGTGCCAAATTTCAGTGAGCCCAACCCGGAGCTGCTCGCCCAGGCCAGCATACAGAATAAGACTGCCAAAGCAGAGCAGAGAAGCAACTCGCCAACAAACGTCTCCAATACAGTGCCGTGGCTGTGGCCCTGCCCGGTGCGGTGA
>TU158081
CGGGGCTTTGTGTAGAGGAGTAGGAGCGGCAGCGCGCACCCGCTGAGCagattaaactgatttaaattgGGCAGAAAAGGGAAATCAATCCGCGTAGGTTGTCGTGGTCGAAGTCTTAAACCAGAAGCAACACTAGCATTACTTCCAGGGCACAAGAAACAACCTCACAGCCATAGTCTCACAGTGTCACTGTACTGCTATATGACCAACTTAACCCGCTCACAAAGACCAGCCCGGCCTGAAAAGAGAGAAATGTGCTTCTCCACAGATATCACACAAGGCCTCCGTCTTCGGTAAAGCAGCGGAGACCCACTCAGGGATAACCCGATATAGCCCTCCGTGTGTGGAAGCGGCTCCCGGCTCTTCCGGGTGGCCGTAGAGAGACTCCGTGCGGCGGATACATTGTTGCGGCGGCGGACACACAGTCGCGGGTTTGTGCGGGAGCGCGGGTTCAAAACTGGGCTCAGTTTTATGATTCTGACCTGGTTGTCCTTTTTTACCGCCTccagattgtatttttatatcttttTAATCGTTCCTTTTCCGGTTTGTTTAAGTGATCAGGGTGAGGAAGTGAGCACAAAAGTGGAGATTAAAAAGCGAAAGTGCAGCCCTACAGATAACACTAGCGGGTGGGGGGTTGGTGTCCCCCTGCACATCTGTCCACTGATCCGGTGCATTACTAATCGGCTGCCCTCAGCTGTGGGCACATATTGCATTTCCCTCCTCTGGTGCCACACGCCCCGATGCTGCTCAAATAAGTAGCGTTTCTGTGAAATTGAGATCAGTTTTCAGATCAGCAGCAGTATCATGTCGAACCTCTCAAACGAAGCCGTTTTCTTGATAAAAGATGTTAAGCCTGGGctgaaaaatttaaatatcGTCTTTATTGTTTTGGAGATCGGTAAGTGCCTGctgtggatggatggataaccCCTCATGGAGAGCAggattgtttctttctttctttcttaaaggGACAGAAGCTTTTAGAAAAGTCTGTTTTCCAGTGATGTAATAGTCTACAGAATGACGCAGTTGTTCCAGAACTTATCCAACTAACATTGTTTGTCAGTTGCCTTTTTCCATGTGCTCctcattgttgtttttggtgttttgtctgttgtaaagctgtgggggggggatttCCTTTACCCGAGTTGAACTCTGCCCAGGCTCTGTGCTGTGGTGTAGTGTGTCAGTCTGGCTCTAAAGCAGACTGTTTTGGAGGagtgttttgtttgcctttgcTAAATCTGCAGGCACAAACACCAGCGTGGATATTAATGGTAATACCAGACGtcttcagattaatttatttaaatgcacacaGGACAGCAGTTCGTTTATAGTCCCAGACTCTCCGAgttgttctgtgttctgtgcagGGGAATTACAATCGATAATATATATTAGTCATATTtgtgtttctccactttcctTCTCGTTCACAGGTCGGGTGACCAAGACGAAAGATGGCCACGAGGTGAGGTCCTGTAAGGTGGCAGACAAGAGTGGCAGCATCACCATCTCCGTGTGGGACGAGCTGGGCAGCCTGATCCAGCCCGGAGACATCATCCGCCTCACCAGAGGTTATGCCTCCATATGGAAGGGCTGCCTGACGCTGTACACGGGCCGCGGAGGAGACCTGCAGAAGATTGGGGAGTTCTGTATGGTGTATTCGGAGGTGCCAAATTTCAGTGAGCCCAACCCGGAGCTGCTCGCCCAGGCCAGCATACAGAATAAGACTGCCAAAGCAGAGCAGAGAAGCAACTCGCCAACAAACGTCTCCAATACAGGAAACGGGGCTCAGACTTACTCCACCTCCAGCTCCTCTCCCGCCCCCCGAGACCCCTCCTCTTTCGGGGGCGCCGGCCGGACAAACGGGCGCGTCCCGGGAAACGGCGGTCCCCCGACTGCCTCGGGGGCCACCGCCGGTGTCTCCAAACCCTCGGTCACCATCAGCAATGGCAGGGACCCCCGACGGGCCTCCAAGAGATGAGACGCAACGCCACGTGCCagtgccccccgccccccaggAGATACCACACGCCTGCCCCCCCGACGTGGCCGCACTACTGCTGCCAGAACCAATACTGaccttcccccacccccccacactttGCAAAAACTATACACCCTACTTGAACACttaatgcacttttattttttatttatcgTAAACTCTTGAAACGTTATTGCTGTAATTTTCATCAggataattttttttctttgaaatgcgtgaacttattttatatgtatgtatgtgtgcgtttatatataattacacacgtatatacatttttattttaaacgaGGAATTGCAAAGCTGCTGGTGCCGACTTGTCGTTTTTCCTCTTGACCAAAATTGACCAGAAGTGACCATGTTGAAGTAGAGGTGGTAGTTTGAGAAATTCACATTCAGTTAGGGTAAATTAAACTAGtggcaaaaacaataaaacattcatacaaaCAAA

Function

symbol description
nabp2 Orthologous to human NABP2 (nucleic acid binding protein 2).
nabp1 Predicted to enable single-stranded DNA binding activity. Involved in double-strand break repair via homologous recombination; mitotic G2/M transition checkpoint; and response to ionizing radiation. Located in cytosol; nucleoplasm; and site of double-strand break. Part of SOSS complex.

NR:

description
PREDICTED: SOSS complex subunit B2 isoform X5

GO:

id name namespace
GO:0010212 response to ionizing radiation biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0070876 SOSS complex cellular_component
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000771 False 1346 mRNA 0.53 6 3044167 3050016
TU158081 True 2477 TUCP 0.49 5 3044257 3049951

Neighbor

gene id symbol gene type direction distance location
AMCG00000765 NA coding downstream 506299 2520235 ~ 2537868 (-)
AMCG00000763 NA coding downstream 644812 2394089 ~ 2399355 (-)
AMCG00000759 NA coding downstream 717562 2262668 ~ 2326605 (-)
AMCG00000755 NA coding downstream 899530 2133482 ~ 2144637 (-)
AMCG00000756 LOC107709571 coding downstream 923408 2098930 ~ 2120759 (-)
AMCG00000770 NA coding upstream 2865 3052881 ~ 3055879 (-)
AMCG00000775 NA coding upstream 15794 3065810 ~ 3078543 (-)
AMCG00000776 NA coding upstream 33439 3083455 ~ 3103231 (-)
AMCG00000778 hspe1,LOC107690609 coding upstream 72192 3122208 ~ 3123800 (-)
AMCG00000785 LOC106586374 coding upstream 131463 3181479 ~ 3205611 (-)
G126037 NA non-coding downstream 485918 2557991 ~ 2558249 (-)
G126005 NA non-coding downstream 523947 2427941 ~ 2520220 (-)
G126020 NA non-coding downstream 581679 2460715 ~ 2462488 (-)
G125875 NA non-coding downstream 1216425 1822252 ~ 1827742 (-)
G125845 NA non-coding downstream 1466821 1575361 ~ 1577346 (-)
G126275 NA non-coding upstream 500824 3550840 ~ 3552977 (-)
G126296 NA non-coding upstream 624265 3674281 ~ 3676927 (-)
G126369 NA non-coding upstream 1194713 4244729 ~ 4245041 (-)
G126428 NA non-coding upstream 1587351 4637367 ~ 4637640 (-)
G126429 NA non-coding upstream 1587942 4637958 ~ 4638285 (-)
G126089 NA other downstream 2203 3036931 ~ 3041964 (-)
G126017 NA other downstream 586284 2451868 ~ 2457883 (-)
AMCG00000741 gtf3c3,LOC104966512 other downstream 1212857 1829544 ~ 1831310 (-)
AMCG00000731 NA other downstream 1273142 1762029 ~ 1771025 (-)
AMCG00000719 NA other downstream 1543506 1478740 ~ 1500661 (-)
G126096 NA other upstream 81698 3131714 ~ 3149252 (-)
AMCG00000777 coq10b,LOC107690612 other upstream 83860 3133876 ~ 3140489 (-)
AMCG00000804 NA other upstream 503031 3553047 ~ 3656561 (-)
G126427 NA other upstream 1586080 4636096 ~ 4636516 (-)
AMCG00000838 cacnb4,LOC108434427 other upstream 1907122 4957138 ~ 4982651 (-)

Expression


Co-expression Network