AMCG00000776


Basic Information

Item Value
gene id AMCG00000776
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3083455 ~ 3103231 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000776
ATGGCAGCCTCTGCGCGGGAGCACCTTATGTTCGTGCGCCGCCGCAGCCCCCACATGCGCTACACGCTGAGCCCCGAGAACCTGCAGAGCCTGGCGGCCCAGAACGCCGGCCCGCCCGAGACCATGGGCTTCCAGCGCGCCAACAGTGACACCGACCTGGTGACCTCGGACAGCCGCTCCTCGCTCACCGCCAGCACCTACGAGTTCACGCTGGGCCTGGCACAGAACCTGATCATCTCCTGGGACATCAAGGAGGAGGTGGACGCCACGGACTGGATCGGGCTGTACCACATCGATGAGACCTGCCCCACCAACGTGTGGGACTCCAAGAACCGCGGGGTGAACGGCACGCAGAAGGGGCAGATCGTCTGGCGCCTGGAGCCCGGGCCCTACTTCATGGAGCGTGAGTCCTTGGGAGACAGggagatgattattattactgtctCACATGctgAGACGAAGATCTGCTTCAAGTACTATCACGGTGTGAGCGGCGCCCTGAGGGCCACCACCCCCTGCATCACGGTCAAGAACCCCGGCGTGCTGgtggggGCGGAGGGGCTGGCGGAGGGGGAGTCTGTAGCCGAACACTGTCGCAAACTGGTCAGCTTCACTCTGTCAGATATCCGTTCCCTGGGGTTAAAGAAGGGCATGTTCTTCAATCCCGACCCCTATTTGAAGATCCCGGCAAAAAGAGCACCTTCCTCACTTTCGCCCACCACGGACAAGTTCGCCAAGAGCCGCCCCATCATCAAGCGCTTCCTGGGAAAGCTGGTGATCCCGGTGCAGAGACTCCTGGAGCGCCACGCCGCGGGGGACCAGCCCATCAGCTACACGCTGTGCCGCCGGCTGCCCACAGACCACGTGAGCGGGCAGCTGCAGTTCCGTGTGGAGGTGGCGTCTGCGGGGCACGAAGACGCCTCTCCAGATGCCATGGGTTCTCTCTTGGGGGCCTCTGCGGTGAATGGGGATCCCGGGAGCCCCTCTGATGATGAGGACATGCCTGGGGGCCCTCACCCTCCTCCCGGGACTGCCAGGGGCCCCTCCCCCACAGGCTCGGAGGGCTCCCTGCCCGGCGAGGCCCTGCGCAATGGGGAGGtgcgggtggtggaggaggaggagcccctgggggtggagggggcCGAAGGTGGTGCGGAGGGCAGCTCGCCGTCCCGCTGTATCCACACACTGCGCCAGGAGTCTCTGAACGACTACCTGGACGCCATTGAGGCCCCCAAGGCCCCCGGGGAGCGGCCCCTGGGCGCCGCCTCGCCAAAACTGCGCAGCAGCTTCCCCACGGACACACGGCTCAGCGCCATGCTGCACATCGACTCggacgaggacgaggagggTGGGCTGCTGCCCGAGGCGGGGGCAGAGTCCGAGGGGGGTCTGATGCTGCTGCTCAACGGGGGGCTGGAGGGGATGCCCCCCAGGACCGCAGAGGTGGGGGAGATGGAGGCGCCGCTGCAGCAGCCGGCTGAGGACACCGAGGGGGGGACCACGGCNNNNNNNNNNCCGGCCAGCGAAGGGGAGCCGCCCCCCAACAGCCCCCCAGAACCCGAGGGACAGGAGGGGCCGGAGGAGCCGGAGCCGGGGGGGTCCAGCCAGGAGCAGGAGAGCGAGGTGACGGAGGGCGGCCCCAGCTCGGGCACGGGGACCACGCGCCAGTCCTCCACCGGCTGCTCCTCCTTCGACAGCACGCGCTACCCGGCCTCATCCTCGCAGgaggaggaggaagggccGGCGGCCTCCACCGAGTCGGGCGGCGCCCCCTCCTCTGAGGTCACGCCCACCACCAGTGACGTTGCCGACGAGGGCGGAGGGGCGTCTCAGGCCACCGGGGGAGGGGAGGAGCTTCAGGGAGCCACGGCAGCCAATgtggacgaggaggaggaggagatctGGCAGAGGAGGCGGAGTCTACAGGCGGCCGGTGGGGAGTCGCAGGAAGAGGAAGTGAGGTCGGCCGGCGCTAGTGGCTCGATGGACTCGGGCCAGAGCGCCACTGAGACGGATGGAGACACAGaCTGGGAGGCGCGCATCGACAGTCATGGGCGGATCTTCTATGTGGACCACGTGAACCGGACCACCACCTGGCAGCGGCCCAccgcccccccagccccacaAGTCCTGCAGAGGTCCAACTCCATTCAGCAGATGGAGCAGCTGAACCGCAGGTATCAGAGTATCCGGCGGACGATGACGAATGAGCGTGCGGAGGACCAGGCCCCCGAAATGCCCCCCGAGGACAGCGACCTCATGCACCACACCATCCCAGAGTACCGGCGAGATGGCGCGACGCCCCCCTCCAGCTCGCGCTCCCGGCTCAGCCTCCTGCTCCAGTCGCCCAGCGCCAATGCCTACCGCCTGTTCACGAGCAACTCGTGTCTGAAGCACATGATCAGCAAGGTGCGTCGGGACGCCCACCACTTCGAGCGCTACCAGCACAACCGCGACCTTGTCACCTTCCTCAACATGTTCGCCAACAAGCAGCTGGAGCTGCCGCGTGGCTGGGAGATGAAGCACGACCACACGGGCAAGAGCGCGCGGCCCAGCAGCCTGTTGGCACATCGCCAGCACCTGACCCGCCAGCGCAGCCACAGCGCCGGGGAGGTGGGCGATGACTCTCGGCACGCCGGTCCCCCTGTCCTCCCGCGCCCCTCCAGCACTTTCAACACGGTCAGCCGCAACCAGTACCAGGACCTGGTGCCTGTTGCGTACAATGACAAGATTGTGGCATTTCTTCGGCAACCCAACATCTTCGAGATCCTACAGGAGAGGCAGCCGGAGCTGATCAGAAACCACCCACTCAGggaGAAGGTGCAGTTCATCCGCAGCGAGGGCGCTCCCGGCCTGGTGAGGCTGTCCAGTGACGCTGACCTCGTCATGCTACTCAGCCTGTTTGAAGAGGAAGTGATGTCGTACGTGCCGCCCCACGCCTTGCTGCACCCCAGCTACTGTCAGTCCCCGCGCGGCTCGCCTGTCTCGTCGCCACAGAACTCTCCAGgTACCCAGAGAGCGAACGCCCGGGCCCCTGCGCCCTACAAGAGAGACTTCGAAGCCAAACTGCGCAACTTTTACCGCAAACTGGAGACCAAGGGTTACGGGCAGGGTCCAGGCAAGCTTAAGCTGATTATCCGCAGGGATCACCTCCTGGAGGACGCCTTCAACCAGATAATGGGCTACTCCCGCAAAGACCTGCAGAGGAACAAGCTCTACGTCACCTTCCTGTTCAACCCCTACTACGGCCTGTTTGAGTACTCCGCCAACGACACCTACACTGTGCAGATCAGCCCCATGTCCGCCTTTGTCGACAACCACCACGAGTGCCCCTGTGACCTAAGTGACCTGGAGTACCTGGACGAGGAGTTCCACCAGAGCCTGCAGTGGATGAAGGACAATGACATCAACGACATGTTGGACTTGACCTTCACTGTCAACGAGGAGGTCTTCGGGCAGATCACGGAGCGCGAGCTGAAGCCCGGCGGCGCCAGCATCCCTGTGTCTGAGAAGAACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGCATCGAGAGGGGCGTGGTGCAGCAGACTGAGAGCCTGGTGCGCGGCTTCTACGAGGTGGTGGACGCCCGGCTGGTGTCTGTGTTTGACGCCCGGGAGCTGGAGCTGGTGATCGCCGGCACGGCCGAGATAGACCTGAGCGACTGGAGGAACAACACTGAGTACAGAGGAGGTTATCACGACAACCACATAGTGATCCGGTGGTTCTGGGCGGCGGTGGAGAGGTTCAACAACGAGCAGCGGCTGCGGCTGTTACAGTTTGTGACAGGTACGTCCAGTATCCCGTACGAGGGTTTTGCGTCTCTGCGGGGCAGTAACGGCCCCCGCAGGTTCTGTATGCTGACCGCTGTGGAGGAGACCAGCACCTTCGGCCTGGAGTGA

Function

GO: NA

KEGG:

id description
K12168 HECW2; E3 ubiquitin-protein ligase HECW2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000776 True 3933 mRNA 0.65 28 3083455 3103231

Neighbor

gene id symbol gene type direction distance location
AMCG00000775 NA coding downstream 4912 3065810 ~ 3078543 (-)
AMCG00000770 NA coding downstream 27576 3052881 ~ 3055879 (-)
AMCG00000765 NA coding downstream 545587 2520235 ~ 2537868 (-)
AMCG00000763 NA coding downstream 684100 2394089 ~ 2399355 (-)
AMCG00000759 NA coding downstream 756850 2262668 ~ 2326605 (-)
AMCG00000778 hspe1,LOC107690609 coding upstream 18977 3122208 ~ 3123800 (-)
AMCG00000785 LOC106586374 coding upstream 78248 3181479 ~ 3205611 (-)
AMCG00000784 NA coding upstream 130190 3233421 ~ 3237636 (-)
AMCG00000788 NA coding upstream 173027 3276258 ~ 3314125 (-)
AMCG00000794 NA coding upstream 407888 3511119 ~ 3517210 (-)
G126037 NA non-coding downstream 525206 2557991 ~ 2558249 (-)
G126005 NA non-coding downstream 563235 2427941 ~ 2520220 (-)
G126020 NA non-coding downstream 620967 2460715 ~ 2462488 (-)
G125875 NA non-coding downstream 1255713 1822252 ~ 1827742 (-)
G125845 NA non-coding downstream 1506109 1575361 ~ 1577346 (-)
G126275 NA non-coding upstream 447609 3550840 ~ 3552977 (-)
G126296 NA non-coding upstream 571050 3674281 ~ 3676927 (-)
G126369 NA non-coding upstream 1141498 4244729 ~ 4245041 (-)
G126428 NA non-coding upstream 1534136 4637367 ~ 4637640 (-)
G126429 NA non-coding upstream 1534727 4637958 ~ 4638285 (-)
AMCG00000771 nabp1,nabp2,LOC106581684,LOC107718374,LOC106575791,LOC107557546 other downstream 33439 3044167 ~ 3050016 (-)
G126089 NA other downstream 41491 3036931 ~ 3041964 (-)
G126017 NA other downstream 625572 2451868 ~ 2457883 (-)
AMCG00000741 gtf3c3,LOC104966512 other downstream 1252145 1829544 ~ 1831310 (-)
AMCG00000731 NA other downstream 1312430 1762029 ~ 1771025 (-)
G126096 NA other upstream 28483 3131714 ~ 3149252 (-)
AMCG00000777 coq10b,LOC107690612 other upstream 30645 3133876 ~ 3140489 (-)
AMCG00000804 NA other upstream 449816 3553047 ~ 3656561 (-)
G126427 NA other upstream 1532865 4636096 ~ 4636516 (-)
AMCG00000838 cacnb4,LOC108434427 other upstream 1853907 4957138 ~ 4982651 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_08070105_08114631 PGAP1, HECW2A coding CI01000009 null 8068699 ~ 8114867 (-)