CI01000009_08070105_08114631 (PGAP1, HECW2A)


Basic Information

Item Value
gene id CI01000009_08070105_08114631
gene name PGAP1, HECW2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 8068699 ~ 8114867 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_08070105_08114631.mRNA
ACTGTTCTCTTGCCATCCCTCCCACTTTCAATTCTGATTGGCCAAACTCAGAACCTATTCCCTCTCTCGATTGGCTAACTTTCCTGTCTGCGTCGTGACGTAGCCCCAGGAGCTGCGTGACAGGTCCGTAGGAGGTTTCCTATAGGTTTAAACAGGCAGTGTGTGGGTTTACAACAAGGAAAGCGTTGACACGATTACAATGAATTTGTGAATATAATAAAGCTTACTTTGGAGACATGAGACTTGCTGTATACGCGTTTTACGGCGTTGCTCTTGGGCTTTTGCTCGTGGGTGTGCGGGAATTATTATTTGGTTTCGAGGAGAATCGATGCAGCATGACATACATGTTCGAGTACCCAGAATACCGACGCGTACAGCTTCCGAGGCGTGTCGCGCGCCAGTACCCATCATACGGGCTGTATCTGTATGGAGAGGGCGCATATGCTCAGGAGACCAGAGGACTCAAGCTCACCGGCGCACCTGTGCTCTTCCTGCCGGGGAATGCGGGGAGCTACAAGCAAGCTCGTTCTCTGGGTTCGGTGGCGTTGAGGAAGGCTGAGAACCTGGACAGACCGATCCATATGAATGTGTTCACTATTGACTTCAATGAGGAGCTGGTGGCCCTGTATGGGGGCAGTTTGCGCAGACAAACTCAGTTTCTACATGAAAGCATCAAAGCCATCTTGCGCCTTTATAAGGACTGTCCAGACCCCCCCACAGGTGTGGTTCTGGTGGGTCACTCCATGGGTGGAGTGGTGGCAAGAGCGTTGTTTACCCTGGCACGCTTCAATCCACGGCTGGTCAGCCTCATCATCACACAGGCCTCCCCCCACCAGGCACCTGTCCTGTCTCTTGACCCTTATATACTGGAGTTTTACTCCACAGTCAGGCATCGCTGGGCCACAAATGCTGAAGACCTTCGAAATGTTACCGTTCTCTCTGTGGGTGGTGGTTACCTTGACTTCCAGGTGCGTTCTGGCTTGACGGCACTGTCCTGTCCCATCGATGACCTCAATAAGATGTCAGTAGTGGTAACTGCAGTTCCCCGAACCTGGGTTTCCACAGATCATATTTCCATTGTTTGGTGCAAGGAGCTGGTTCTGGCCACAGTCCGGGCATTCTTCGACCTTATTGAACCTGAAACGGGGCAGTTCACAGAGAGTCCAGAGAAGCGAATCTCAGTGTTGAACTATCACTTTTTTAGACACCCAGTGCTGCAGCCTGGAGAAGCACAGGATGCCCCTGTCACTTTCTCAGCTCCCCCTGAGGCGTGGAAGGAGGTCAACACACTCCGTCTGTTCTACACTGCCCCCAAGGAAGCTCAAGTCAAGTACTTCCTGTTTGCTCTCTCCAGTCGAAGGAAGGCCTACAGTCATTTCCATTGCCGCAGTAATAATATGGAAATGACCAGCTGGCTATATGGCTGCACACAGATGAGTGGCTCGATGTGTGTTCAGGCAGTAGATCTGTCATCTGAGACAGAGCTCCTTCCAGCCTATAAGGCTGTGACAGTGAAAATCAGTGAACTCTTGTCAGTCTCTCATCTCATCATTGATGCCTCTAACCCCAGCGGAGCACAGTTTGTAGTGGAGTGTGAGCTGCAGAGAGAGCAGAGCCTGACTGTCTCAGTGCAGGTGCCTCATACGCTGTCCTTTGGTCTGACCGTCAGTGACATCAGCATTAACTCCTCTGGGCTGCTCCATACACTAATGCTACAAGACTTTCATCAGGTTTATCAGGCTTATAGAATAACGATCATGAGCCATTGCAAAACCTCTAAAGCTCTCATCAGAGTACTGATGATTGTGTCTTTTAAAACTTTGTATGTTTTCCACCAAAGTATTCCTTCGGTATCTGAGATCTACAGCATGCTTCACACCAGCCGCCCAGACAACACCTCCAGTGCCATCCTGCAGCTCCACACTGCCCCCAACTGCCAATACAGGGTGTCTATTCGGACTTCATTTCCCAAAGTGCTTGGGCAGATTCTTCGTTTCTGTGGTCCAGTTCTGCCCGTCTACTCAGCTGTAGTGCTTCTCCTGATGATCAGGGCTCAGCTGAGCTCTGTCAAAAGATCGGGGCATCCTGTTGGAATGCAAGAGGCCATGAGTAAATCCTTACAGCTCCACAAACTGGAACTGCCTGTGCTCCTGCTGCTGCTGCTGCTCAGGCAGAGCTGGTTTCAGGATGTCTGGTCCTTTCTTGGTCTTCCTTGGGTGGATACTCTTCCTCTAAACTCTGTGGAAAGCATATCCCAGGATCCAAAAGCCTCTATGCAGGAATGGCCTCGTCTAGTGTCCCCACTGCTCTGTGTGCTCGGTGCAGCCATTGCATTCTGGGGTAGCACAGTCCTCAGAGTGTCTGTCTACTTCCTGTCCTTTTTTCTTGCTCCACTGCACAGACCTTCAGTGTCCCGGGACTGTGGCACGCTTCGTCTTCATACTCAGATTCTCCTGATCATCTCTCTGAGTGTGCTGGGAGGCGTCACCTGTGGAGCGCTGGCTCTTATGGTCTCCGCTCTTCTCCACTTCTACAGAGTGCTTAGATTACAGATGACAGAGAGATCACTGAGCCACATGTTGAACCTGGCGCCCCAGAAAGTTTCACAAAACTCAGAAAATGGTTTTCATGGCACTGATTCTCACAGCAATGGTAAAGAATGTAATGGCAGCCCTTTACTGTCAGAATCAGTTCTACAAGACGTCCGAGATGATCTGCAGCTCCACTTCAGTTTGTCCACAATGCTTACTCTTACCATGATGTTCAGCACCCCTTCCCTTATCCACTGGAAGCACAATCTCAGATATTGGGTTCATTTGGATCCTGACCCCTGCTGGCCTCACATTCTACCCCTGCTCATCAGCTCTGTGCTGCTCATCAACTGTAACACAAATACACTCCTCCGCAGCTCTGACCCTCTTCGTCTGCTCTTGTTACTTTTGACTTCCCTGCAAACTTTAAAAGAAAAATTGAACATGTTTGAAAAAGGGAACTGTCCCCTCAGTCGTGATTTCTGGTTCGGGTCAATAGCCATTATCATAGCCAAGTGCTCTAACAGAGGACAGGCCAAAAGAGTTCCTATCTGGTCCTTCACCTATATGTCCAGACAATTACAGTTCAGTCCAGGTCCGATCCAGGATTCAGCAGTTCTCCCGTCCAGGCCCCGCTCCAACCCGGCGTCAGGCATGGCGCCTCAGGGGCGGGATCACCTGGCCACACGGGAGTCTGCAGGTCGTAGACGGAGCCCAAATGTGCGGCACACACTCAGCCCAGACAATCTTCGGAGCTTAGCCGAGCGTGGTGGGGCCGAGCAGGCTGGAGTTGGACTCCTCAGAGCCAACAGTGATACAGACCTGGTCAGTTCTCAAGGGCGATCCTCACTCACAGCTTCTACTTTAGAGTTCACGATGTGCCGGGGCCAGAACTTGGTCATCTCATGGGATATCAAGGAAGAGGTGGATGCCACAGACTGGATTGGCCTGTACCACATAGATGAGACCTGTCCATCAAACATGTGGGACTGCAAGAACCGTGGGGTTAATGGTACACAGTGTGGGCAGATTGTCTGGAGGCTGGAGGCAGGGCCATACTTCCTTGAAGGCCAGACAGTAAAGGTTACACAGTACAGTGCTAAATGGCTATTTGACTGCAGCATCACATCTACTGTATATGTTTGGAGGTCGATGGTCAAGGTGAAGGACAACAAGCTTCAGAAAGCAGTCGAAAACTGGTCAGCTTTACCTTATCAGAAACACACTTTTGTGGCTCTTATGACAGACGTCTTAGTGATTGAGATTAAAGACAAGTTTGCTAAAAGTCGCCCAATTATTAAGCGCTTCCTGGGTCAGCTGAACATTCCGGTGCAGATGCTGCTGGAGAGACATGCGTCAGGGAACCAATCACTGAGCTTCTCTCTATGTCGTCGTTTGCCCACTGATCATGTGAGCGGTCAAATGCACTTTAAAGTGGATATCACATCTATGGGCCAAGATGATGTTTCCACTGAGACGATTTTAGGGGCAGCAGCCCTCAATGGAGCTCCTGGAACCCCTTCAGATGATGAAGAGCTGCCCCGTCCTCTCCCTGTCCCATCAGCAGGCCCTTCACCCACCGGCTCCCTGGGTTCTCACAGAAATGGGGAAGGTAGCAGCATACCCTCCCCGGACACCGAGATGTATGGGGCCACCCTGGATGATGAGGGCCCTTCTTCTCCAGACCTGCTCCAGGGTTCTTTCAGTGAGCAGCTTGATGCTATTGATGCCCCTAAGGGCCCGGGAGATAGGCCTCTTGGGGCAGCTTCTCCAAAACTGCGATCCAGCTTTCCCACATACACACGCCTCAGCGCTATGCTGCACATCGACTCTGATGAAGATGAAGAGAGGTCCGCTGCTACGGAGGCCACGCTGCCAACATTTAATGGTGTTTCAAGGACTCAACAAACCCCCCCAAAACCACCAATTACAGAACCTGCGTTTAAAACATCTGTAGAGGAACCTCCAGAAAAGGCTGGACTGGAGTTGGAAACAGAGACTCTGAATATAGGAACAGAGGTGCCTCCTGAGCCAGAGGTCATGCCGAGTTCAGTCGCCCCTGAGGAGGCAGAACAGGGGGCAGAGGCAGCCATTGACCCAGGGGGAGAAGATCTTTCAGATGATCCACCCACAACTTATGAGGTTGCTGAGACTGCTGAAGAAACCCATCCAACTAATGAGCAAGAGAGGGACGCTCCAAAACCAGAACCATCAGCCATTGAGGAGGAGGAATGTGAAGATGTGACTGAGGACACAATGTCCAGAAGGTGGAGCCTGGAGGCAACAGCAGGTGTGTCACAGGAGGACGAGGAAGAGGAGGAGTTAATGCCATCAGGTGATGGAGAATCTGTGGATTCTGAGACCTTCGTTACCGAGACAGAATCTGAATCAGGTGTCCCTCAGATAAACGGAGATCAGCGTGTTAATTCTCTGCCATCTGTAAGACAAGATGTCCACAGATACCAGCGTGTGGACGAGCCCTTACCTCCCAACTGGGAGGCTCGTATAGACAGTCATGGCCGTATCTTCTTTGTTGATCATGTGAACCGCACCACCACGTGGCAGAGACCCACTGGCCCACCTGCCCCACAGGGTCTGACCCGCTCCAGCTCCATACTGCAGATGGAACAACTCAACCGCAGGTATCAGAGTATCCGTAGGACAATGACCAGTGAAAGGTCTGAGGAACAGAGAGTGGATGTTCCTCCTCCTGAAGAAACAGACCTGCTGTCCCACTCCATCTCTGAATACCGGCGGGACGGCTTTATGGGTCAAGCCAGCTCACGTTCTCGTCTGGCTTTGCTGCTTCAGTCTCCTGGTGCAAAGTTCCTCTCCAGTCCAGACTTCTTCTCTGTTCTGCATTCTAATCCTAGTGCCTATCGCATGTTCACAAGTAACACGTGTCTGAAGCACATGATCAGTAAAGTTCGAAGGGACGCACAACACTTTGAGCGGTACCAACACAACCGGGACCTCGTAAACTTCCTCAATCTGTTCTCCAACAAGCAGCTGGAGCTGCCACGGGGCTGGGAGATGAAACATGACCACACTGGGAAGGCCTTCTTCGTGGATCATAACTGTCGTGCCACAACGTTTATTGACCCACGGCTGCCCTTACAGAACTCCCGGTCCAGCGGCCTGCTGGTTCACCGACAGCACCTGTCCCGCCAGCGCAGCCACAGTGCAGGAGAGGTAGCAGATGACTCTCGCTCTCCGAGTCCTCCTGTCCAGGGCCGTTCATCAAGAAGCAGTCAGTACCAGGACTTGGTGCCTGTGGCTTATAATGAGAAGATTGTCGCCTTTCTGCGACAACCCAACATTTTTGAGATTCTGCAAGAGAGACAGCCAGAGCTCGTGAGAAACCACTCCCTTAGAGAGAAGGTTCAATTCATCCGCAATGAGGGGCCAGCCGGGTTGACCCGTCTGTCTAGTGATGCAGACCTGGTTATGTTGCTCAGCCTGTTTGAAGAGGAAGTGATGTCGTATGTGCCGCCCAATGCCTTACTGCTCTCCAGCTACTGTCATGCCTCCCCACAGAGCTCCCCTGGAACTCCGCGGGCCAATGCTCGAGCCCCTGCACCCTACAAGCGTGATTTTGAGGCCAAACTAAGAAACTTCTACCGCAAAATGGAGACCAAGGGCTACGGGCAGGGGCCGGGAAAAGTGAAATTGGACTATAGTGGTCCATCCAGAGAATTCTTCTTCCTGGTTTCCCGAGAGCTGTTCAACCCATACTATGGACTATTTGAATACTCAGCTAATGACACTTACACTGTGCAGATCAGCCCCATGTCAGCCTTTGTGGACAACCATCATGAGTGGTTCCGGTTCAGCGGACGCATTCTGGGTCTTGCTCTAATTCATCAGTACCTGTTGGATGCATTCTTCACCCGACCCTTTTACAAAGGACTTCTTCGCATCCCATGTGATTTGAGTGATCTAGAGTTTTTGGATGAGGAGTTCCATCAGAGTCTGCAGTGGATGAAAGACAATGACATTGAGAATATGCTGGACCTCACCTTTACTGTCAATGAGGAAGTGTTTGGACAGATTACAGAGCGTGAGCTAAAGCCGGGTGGGTCTGGCATTGCTGTGTCAGACAAGAACAAGAAAGAGTACATTGAACGCATGGTGAAGTGGAGGATTGAGAGGGGTGTAGCCCAGCAGACTGAGAGTCTTGTGCGAGGATTTTATGAGGTGGTGGACGTCCGACTCGTCTCAGTGTTTGATGCCAGAGAGCTGGAGCTGGTCATTGCTGGAACAGCGGAAATTGATTTATCCGACTGGAGAAGCAATACAGAATACAGAGGAGGTTATCATGACAGCCACATAGTGATTCGATGGTTCTGGGCAGCAGTGGAGCGTTTCAATAATGAACAGAGACTGCGACTCCTTCAGTTTGTTACAGGCACGTCCAGCATTCCCTATGAGGGCTTTGCTTCTCTGCGGGGCAGCAACGGCCCACGTCGTTTCTGTGTGGAGAAATGGGGCAAAGTGACTTCCCTCCCAAGGGCTCACACCTGCTTTAACCGCCTGGATCTCCCTCCCTACCCCTCCTTCTCCATGCTCTACGAGAAGATGCTCACTGCTGTGGAGGAGACCAGCACCTTTGGTCTGGAATGAGCTCCCATCACAGCATAAGTGCTACTGATTTTTCCCCAGTTCCTAACAACCTGGCTTTATTTTCATCCCTCACTCTTCACTACGATCATGGTCACTGGACATAATCTTTTCGTCAAAGTCTACGGAACTGGAATATATGCCATCAAATGACTCATTGGGCATGTGCCAACTCCTGCTCTATAGAGTATGAACTCGAAGCCCAAAGTATACTTCAGCTGTCCGCATTCTGCGACGGTCAGCGCACTGTCCGTGTGATGTAATTGTTGTCATCAGGAGGGTCCGCGGACGGTGCGCACGTGCGAGTGACTTGAGCACTTGAAAACAAAATCCACCAAACGCGTCTTTCCGCACTCACGGCCAAAGGAGTATACTTTGAAAGGCTCGCGCACCCACCTGTGTGCGAGACAGAGAGGAATGTGGAAAATGAAGTATACCCGGGCCTTTACACATTGACAGAAATCAGAGCTGGAATCTTGGTTATCTGGTTTTGGCCTTCGGATTTGTTTAGACCAGTACATTTTGATCTGGGTTTTAGGTCTTTGCCTTTTGTTCTTGACTGAGCTGCTTTTTAAAAAAAAGTCAAAACTATATCTATATGGTTTAAAGGGACAAAGCTGTGATGATTTTTGCTGCATGTCTTTCTCATGGAAAGATAATGTCAGTTAAAAAGGACTTTCAGAGGTTTCACTTAAGGTTTGCGCTCTTGGTTTTGAGGGGTCTAAAAGACATTGATCTTGGCTGCAGTTCTCATTCTTTTTTCCATCTTTCAAGAGAACGAACCCATTAAAACACAAAACAGCATGCACACTCTCTTATAGAGATCCTTACACCAAATGTAGTGGTTGTAGAATAGCAACCTGAACATCCTAGGTTCAAACCCTGAAAAGGATGACCTATGAACTAGAGAGTTCCTCTATCACCTCTTGTGCCCTTGAGCAAGACATTTCATCACCAGACTGTTCCAGGGGACTGTAAATGTAGTAATTCACATTGGTCACTGATTAACTAACAAACACCAACACTCAGTACTTTATAACACACACCCATTTTTTAAATCCACCTCTCAACCTTTTATGCAACCCACAAATGTTACTAAAAAAAACAAAAAAAACAACAACTATGAATGTATAAACACTGATCACCATGTGCAATGTGTGCAACAGATATTTGTGTATCAGGAATGGTAGATTTGTTCTTAGAGTTAATCATAAGGAGACCTATTGTTCTAAACTGTGGTGACAGACACAAACAGTGGCCTTGAAATCATCTTTATTAAAATGTATAGTTGGGTATAGTTAATATGATGGTAATGTGTGCAGTCCACTGAAGTAATTTAAAACCAGGACTGCAGTGGTTAAAACCAGTAAAAACAGATTAACGAGATTCTTCTGCTATGGCAAAATAAA

Function

symbol description
hecw2a Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including cellular protein metabolic process; negative regulation of sodium ion transmembrane transporter activity; and regulation of dendrite morphogenesis. Predicted to be active in cytoplasm. Orthologous to human HECW2 (HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2).
pgap1 Predicted to enable phosphatidylinositol deacylase activity. Predicted to be involved in GPI anchor metabolic process and endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human PGAP1 (post-GPI attachment to proteins inositol deacylase 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K05294 PGAP1; GPI inositol-deacylase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_08070105_08114631.mRNA True 8560 mRNA 0.50 55 8068699 8114867

Neighbor

gene id symbol gene type direction distance location
CI01000009_08058976_08066474 STK17B coding downstream 1921 8058624 ~ 8066778 (-)
CI01000009_08050911_08053397 NA coding downstream 15199 8050421 ~ 8053500 (-)
CI01000009_07953250_07953748 NA coding downstream 114560 7952718 ~ 7954139 (-)
CI01000009_07625693_07637462 SLC39A10 coding downstream 431237 7625554 ~ 7637462 (-)
CI01000009_07500752_07541007 LRCH1 coding downstream 527692 7500602 ~ 7541007 (-)
CI01000009_08116450_08117961 NA coding upstream 1504 8116371 ~ 8118398 (-)
CI01000009_08121789_08159923 LRRFIP1A coding upstream 5852 8120719 ~ 8159923 (-)
CI01000009_08207210_08207823 NA coding upstream 92252 8207119 ~ 8207971 (-)
CI01000009_08208406_08220935 NA coding upstream 93334 8208201 ~ 8221327 (-)
CI01000009_08224923_08231059 NA coding upstream 110009 8224876 ~ 8231483 (-)
G55499 NA non-coding downstream 173540 7894880 ~ 7895159 (-)
G55492 NA non-coding downstream 186616 7881763 ~ 7882083 (-)
G55430 NA non-coding downstream 249755 7818645 ~ 7818944 (-)
G55427 NA non-coding downstream 251328 7817145 ~ 7817371 (-)
G55416 NA non-coding downstream 275127 7793358 ~ 7793572 (-)
G55823 NA non-coding upstream 53614 8168481 ~ 8232646 (-)
G55819 NA non-coding upstream 129624 8244491 ~ 8246096 (-)
G55815 NA non-coding upstream 147299 8262166 ~ 8263697 (-)
G55868 NA non-coding upstream 162676 8277543 ~ 8278157 (-)
G55872 NA non-coding upstream 179884 8294751 ~ 8295043 (-)
G53515 NA other downstream 2563451 5502395 ~ 5505248 (-)
G52828 NA other downstream 3837230 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 4806742 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 5169292 2883688 ~ 2893975 (-)
G52410 NA other downstream 5506166 2551724 ~ 2562533 (-)
G55814 NA other upstream 310954 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 743285 8856310 ~ 8860563 (-)
G59097 NA other upstream 4173350 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 5860521 13975099 ~ 13978614 (-)
G59490 NA other upstream 5918697 14033564 ~ 14037873 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00000776 NA coding CM030137.1 CM030137.1 3083455 ~ 3103231 (-)