G55823


Basic Information

Item Value
gene id G55823
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 8168481 ~ 8232646 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU63511
AACACCAGACAATGTAGAGAGAGGGGAGATGATTTCTCTGGGGTTGCGCAGCAACATCCTGAAGTCCTTCTGCATGAAAACCACACTTTCATCAAAAGCTATTTGCCTGAGCTCAGCCTCATCAGCAGCTCTGGAGCCAGCAGCCAAAGTAAGAACACCCATTTGACGAAGAGCTTCAGCCGGCTGTTGGACAGCGTCTTTAGATTTTTTACTGGTCAGGAGCAAGACAAGCTGTGGCACTTGATCTTGAATGCGGCTCCCACTCTCAGCTCTGAGCATGTTGGTTCTCACAAAATCCAGGGCAGCACCAATGTTGACTTCAACCGAAGGTTTGGGTTTTATTTTTGCGAGAGCAGAGATTAGTGATTCTTTTGAATTGAATGAGTTGAGGTTGATCTCTGATCTTGGGGTGGTGGAGAACATGGCCACTCCAACCTGCACCTGATCAGGTCCAATTGGCATGGTGTCAATAAACTTTCTGATGAATTCTCGCACTGCATTGATTACGAGGGTACCCATGCTACTGTCAACGAGGAAAATTATATCTCTCTTCCCAACAGCCAAGGCATCCTGAGCTTCAAGTTTTGGGAATAGACCAAAAGCCATTATACCCAAGAGGGCATACAGTAACAACCGGTTCGTCCCCATTGTCCACAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU63511 True 658 lncRNA 0.47 2 8168481 8232646

Neighbor

gene id symbol gene type direction distance location
CI01000009_08121789_08159923 LRRFIP1A coding downstream 8558 8120719 ~ 8159923 (-)
CI01000009_08116450_08117961 NA coding downstream 50083 8116371 ~ 8118398 (-)
CI01000009_08070105_08114631 PGAP1, HECW2A coding downstream 53614 8068699 ~ 8114867 (-)
CI01000009_08058976_08066474 STK17B coding downstream 101703 8058624 ~ 8066778 (-)
CI01000009_08050911_08053397 NA coding downstream 114981 8050421 ~ 8053500 (-)
CI01000009_08283637_08293491 TRIM63B, TRIM63 coding upstream 50712 8283358 ~ 8293491 (-)
CI01000009_08299725_08300042 NA coding upstream 66538 8299184 ~ 8300949 (-)
CI01000009_08337497_08351090 INTS6 coding upstream 104372 8337018 ~ 8352070 (-)
CI01000009_08363231_08372375 DHRS12 coding upstream 130525 8363171 ~ 8372438 (-)
CI01000009_08389932_08402359 NA coding upstream 156987 8389633 ~ 8403022 (-)
G55752 NA non-coding downstream 65816 8098507 ~ 8102665 (-)
G55499 NA non-coding downstream 273322 7894880 ~ 7895159 (-)
G55492 NA non-coding downstream 286398 7881763 ~ 7882083 (-)
G55430 NA non-coding downstream 349537 7818645 ~ 7818944 (-)
G55427 NA non-coding downstream 351110 7817145 ~ 7817371 (-)
G55819 NA non-coding upstream 11845 8244491 ~ 8246096 (-)
G55815 NA non-coding upstream 29520 8262166 ~ 8263697 (-)
G55868 NA non-coding upstream 44897 8277543 ~ 8278157 (-)
G55872 NA non-coding upstream 62105 8294751 ~ 8295043 (-)
G55886 NA non-coding upstream 145441 8378087 ~ 8387297 (-)
G53515 NA other downstream 2663233 5502395 ~ 5505248 (-)
G52828 NA other downstream 3937012 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 4906524 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 5269074 2883688 ~ 2893975 (-)
G52410 NA other downstream 5605948 2551724 ~ 2562533 (-)
G55814 NA other upstream 193175 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 625506 8856310 ~ 8860563 (-)
G59097 NA other upstream 4055571 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 5742742 13975099 ~ 13978614 (-)
G59490 NA other upstream 5800918 14033564 ~ 14037873 (-)

Expression


Co-expression Network