Gene
RNA
| Item | Value |
|---|---|
| gene id | G55815 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 8262166 ~ 8263697 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU63501 | True | 1110 | lncRNA | 0.49 | 4 | 8262166 | 8263697 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_08224923_08231059 | NA | coding | downstream | 30683 | 8224876 ~ 8231483 (-) |
| CI01000009_08208406_08220935 | NA | coding | downstream | 40839 | 8208201 ~ 8221327 (-) |
| CI01000009_08207210_08207823 | NA | coding | downstream | 54195 | 8207119 ~ 8207971 (-) |
| CI01000009_08121789_08159923 | LRRFIP1A | coding | downstream | 102243 | 8120719 ~ 8159923 (-) |
| CI01000009_08116450_08117961 | NA | coding | downstream | 143768 | 8116371 ~ 8118398 (-) |
| CI01000009_08283637_08293491 | TRIM63B, TRIM63 | coding | upstream | 19661 | 8283358 ~ 8293491 (-) |
| CI01000009_08299725_08300042 | NA | coding | upstream | 35487 | 8299184 ~ 8300949 (-) |
| CI01000009_08337497_08351090 | INTS6 | coding | upstream | 73321 | 8337018 ~ 8352070 (-) |
| CI01000009_08363231_08372375 | DHRS12 | coding | upstream | 99474 | 8363171 ~ 8372438 (-) |
| CI01000009_08389932_08402359 | NA | coding | upstream | 125936 | 8389633 ~ 8403022 (-) |
| G55819 | NA | non-coding | downstream | 16070 | 8244491 ~ 8246096 (-) |
| G55823 | NA | non-coding | downstream | 29520 | 8168481 ~ 8232646 (-) |
| G55752 | NA | non-coding | downstream | 159501 | 8098507 ~ 8102665 (-) |
| G55499 | NA | non-coding | downstream | 367007 | 7894880 ~ 7895159 (-) |
| G55492 | NA | non-coding | downstream | 380083 | 7881763 ~ 7882083 (-) |
| G55868 | NA | non-coding | upstream | 13846 | 8277543 ~ 8278157 (-) |
| G55872 | NA | non-coding | upstream | 31054 | 8294751 ~ 8295043 (-) |
| G55886 | NA | non-coding | upstream | 114390 | 8378087 ~ 8387297 (-) |
| G55821 | NA | non-coding | upstream | 143156 | 8406853 ~ 8413790 (-) |
| CI01000009_08419132_08424961 | FAIM, FAIMA, FAIM.L | non-coding | upstream | 161237 | 8418976 ~ 8425212 (-) |
| G53515 | NA | other | downstream | 2756918 | 5502395 ~ 5505248 (-) |
| G52828 | NA | other | downstream | 4030697 | 4217420 ~ 4231469 (-) |
| CI01000009_03261739_03262843 | NA | other | downstream | 5000209 | 3261038 ~ 3262843 (-) |
| CI01000009_02885473_02893975 | NA | other | downstream | 5362759 | 2883688 ~ 2893975 (-) |
| G52410 | NA | other | downstream | 5699633 | 2551724 ~ 2562533 (-) |
| G55814 | NA | other | upstream | 162124 | 8425821 ~ 8428012 (-) |
| CI01000009_08858198_08860555 | NA | other | upstream | 594455 | 8856310 ~ 8860563 (-) |
| G59097 | NA | other | upstream | 4024520 | 12288217 ~ 12289518 (-) |
| CI01000009_13975122_13976026 | NA | other | upstream | 5711691 | 13975099 ~ 13978614 (-) |
| G59490 | NA | other | upstream | 5769867 | 14033564 ~ 14037873 (-) |
