G55819


Basic Information

Item Value
gene id G55819
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 8244491 ~ 8246096 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU63505
GAATAAGTCTTACCCGCCACAGTAGGTGTCGTTGGCTTGACTTGTACAAGCACATTGCTGAGGGAGCTGATAAACTGCTGCTGGACACTGGGAAGATCAGAGAATTCATTGATGGACTGTGCATAGGTAGGATCGTTGGCAATTCTCTGCACCTCTCTGCTCGAATTTCTGGTGCCAATGCCAAAAATCAAGATTCCCCTCTCTTTCAGGGCAGAGGCAGGTGCATCTATGTTATCGCTTGACCGTCCTCCACTGAGGAGGATAAGAATCTGAGGGACACCCTCTTGCTTTCTACTCCCCGCAGAGGCAGTGAAGACACTGTCCCTCACGTACTGGAGAGCTGCCCCTGTGTTGAGGGGTCTCCCTCCTCTATGCCTCAGACCTCTGACAGTGTTCAGGATCTCCCCTTTTGTTGAGTAGGTATTCAGATAGAAATTGACCTCCGCGTCTCTACTGTACTGCACCACAGAAACACGGTCTCTGTTTGCCTCTATGTTGAATTGCTCCACTACTCTTTGCACAAAATCACGCATAGCTGGGAATGAATTCCTAGTGCCATCTGAACCGTCCAGCAGAAACACTACGTCCTTTCTGGGTGCGACGTAATCAGCTAGGGGGAGGGGAAAACAGCATCATTAACACCGCGTAAATGTCGATAACCTTCATAATGACACATCAGTTCATCACCTCATTAACCGTCTAAGCTGTGCGTGAAAAAAAGTTGGGACATCAAGTAGAAAGACAAGACACGGCGTATCGTAAAGTTCTGCCATGCACATACCGGTTACAGTCGGTGTAGTTGGAGTGATGGGAATTGAAACAGCCTGGACAGAGGCCAGCAGCTGCTCTTGGACATTTGGAAGCTCGCTGAAGTCGGACACGGACAGAGCATAATTGGAGTCGTATGAAATTCTCTGCAATTCTCTGCTATCAGAGCCCCTCGATCCTATTCCAAAGGTCAAGACGCCAAGCTTTTTCAGAGAAGAGGCTGCTGCCTCAACACTGTCAAATGACCTTTCCCCGCTAAGCAAAACCAGTATCTGCGGCACACCCTCCAGCCGTCTGCTGCCGGAGGAGGCAGTAAAAACATTGTCTCTGACGTACTGGAGCGCTGCCCCCGTGTAGAGGGGTCTGCCTCCTTTGTGCCGCAGACCTCTGACACTGTCAAGAACTTCTTCCTTTGTCGTGTACGTGTTCAGATAGAAATGGGTCTCTGGGTCTCTGCTGTACTGGACCACAGAAACGCGATCTCTGTTCTCAGCTACTTCCAATTTCTCCACCATTCTTTGCACAAATTCTTTCATTGCTGGGAACCCATTCCTAGTTCCATCCGATCCATCCAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU63505 True 1344 lncRNA 0.50 2 8244491 8246096

Neighbor

gene id symbol gene type direction distance location
CI01000009_08224923_08231059 NA coding downstream 13008 8224876 ~ 8231483 (-)
CI01000009_08208406_08220935 NA coding downstream 23164 8208201 ~ 8221327 (-)
CI01000009_08207210_08207823 NA coding downstream 36520 8207119 ~ 8207971 (-)
CI01000009_08121789_08159923 LRRFIP1A coding downstream 84568 8120719 ~ 8159923 (-)
CI01000009_08116450_08117961 NA coding downstream 126093 8116371 ~ 8118398 (-)
CI01000009_08283637_08293491 TRIM63B, TRIM63 coding upstream 37262 8283358 ~ 8293491 (-)
CI01000009_08299725_08300042 NA coding upstream 53088 8299184 ~ 8300949 (-)
CI01000009_08337497_08351090 INTS6 coding upstream 90922 8337018 ~ 8352070 (-)
CI01000009_08363231_08372375 DHRS12 coding upstream 117075 8363171 ~ 8372438 (-)
CI01000009_08389932_08402359 NA coding upstream 143537 8389633 ~ 8403022 (-)
G55823 NA non-coding downstream 11845 8168481 ~ 8232646 (-)
G55752 NA non-coding downstream 141826 8098507 ~ 8102665 (-)
G55499 NA non-coding downstream 349332 7894880 ~ 7895159 (-)
G55492 NA non-coding downstream 362408 7881763 ~ 7882083 (-)
G55430 NA non-coding downstream 425547 7818645 ~ 7818944 (-)
G55815 NA non-coding upstream 16070 8262166 ~ 8263697 (-)
G55868 NA non-coding upstream 31447 8277543 ~ 8278157 (-)
G55872 NA non-coding upstream 48655 8294751 ~ 8295043 (-)
G55886 NA non-coding upstream 131991 8378087 ~ 8387297 (-)
G55821 NA non-coding upstream 160757 8406853 ~ 8413790 (-)
G53515 NA other downstream 2739243 5502395 ~ 5505248 (-)
G52828 NA other downstream 4013022 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 4982534 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 5345084 2883688 ~ 2893975 (-)
G52410 NA other downstream 5681958 2551724 ~ 2562533 (-)
G55814 NA other upstream 179725 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 612056 8856310 ~ 8860563 (-)
G59097 NA other upstream 4042121 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 5729292 13975099 ~ 13978614 (-)
G59490 NA other upstream 5787468 14033564 ~ 14037873 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G69896 col6a3,LOC107567775,LOC107685998 non-coding NC_056707.1 CM032076.1 13310873 ~ 13325669 (-)