CI01000009_08058976_08066474 (STK17B)


Basic Information

Item Value
gene id CI01000009_08058976_08066474
gene name STK17B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 8058624 ~ 8066778 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_08058976_08066474.mRNA
GGAATCTTTGAGGGCTAAATGAGCTAATCTGCGCTAGCTAGAGGCTCTTAGCATCAGTTGTCGTGTTCAAACTCAACTGAACTCACTCCAGTTAAGCGAATTTATTTATTGTCAACACTTTTTGCATAACCGCGGCGCGAACTAAACTCTCGTTCTGAAGACGTTTCACCGTTTTCGGCGTGAACACCGTCAAGAGGCCGGTGGCAGTGGGTGTTTTTTCCTGGTGGTGACTCTGAACATGAGCAGAGTGCTGGTTAAGTGATAATAGCAGTCTGTACTCTTCACTGGACACTCGCTGGTGGTGATGGCCCGGAGGAGGCTGGACAGTCGCAGTGGATCCTCGGCTCTGCTGTCAGAGATCCACACTCCCGTCCACACGGATCCTCTGGACGCCGGGTTTGACATGAGCAACGAACTTGGCAGGGGGAAGTTTGCAGTGGTGAAGCGGTGTGTGGAAAAGGCCACAGGGAAAGTCTTCGCTGCAAAGTTCATCAAGAAACGGCGACGAGGTCGCGACTGCAGGGCGGAGGTTGTTCATGAGATTGCCGTTCTAGAGGCAGCGAAGAACAACCCTCGTGTGGTGAACCTGCATGCTGTATATGAGACCGATCACGACCTCGTTCTAATGCTGGAATATGCGGCAGGTGGAGAGATATTTGACCACTGTGTGTCAGAGGAGCTGCTTCCTGAAGGTCAGATCACCCGTCTGATCAGACAGATGCTTGAAGGCGTTCACCTACTCCACCAGAGCAGCGTGGTCCACCTTGACCTGAAGCCCCAGAATATTCTCCTGACCAGTCTGAGCCCAATGGGGGATATAAAGATAGTGGATTTTGGGTTGGCCCGCAAGTTGGGTTCTTCTGGGGAGCTCAGAGAGATTCTGGGAACCCCTGAGTACGTAGGTAAGGCTATTCAGTGTCATTCTTTCAGTGTTCATGGTCTCATCATGCCAGAAGAGTTCATGCTCAATGAAAGTGGTGTATTTAGTTATTTTGCTTTTTTTTTAATTATATATCCAGCCCCTGAGATCCTGAACTATGAACCAATCACCACAGCAACAGACCTCTGGAGTGTGGGTGTGATCACCTATATGCTGGTGACAGGAGAGTCTCCCTTTGCTGGCGAGGATAAACAGGAGACCTTCCTAAATGTGTCCCAGGTGAACGTGGACTACAGCAGAGAGGCCTTCTCAAGGGTGTCTGAGTTGGCTGTCGACTTCATCCAGAAACTGCTGGTCAAAGCACCAGAGGATCGTCCCAGTGCAGCCGACTGCATGACCCATCCCTGGCTATGGCTCCACTCTTCAGGTTTTGATCCGATCCCCATGACCCCACGCACTCCCCGGGAAAGGAGTTTCGGGGGGAAGTGGTCCGCGCCACCCGAGGACCCTGAAGACAAAGAAAACATTCTGGACTCGCCATATATCAAGAGGTTTCGTTTTGAGGAGGACATGGCCTTACGGTTTCCCAGAGATGTCACCAGTCTGCAATCATAATAGAGCTATTGTCTCCTAAGACGGGAGGCTCTTGTCACGGTCGTGTGCTCACTGTATTCCGTCATCTTAAAGGAAAACTTGAATCTATTCCTTGCCTGGGAAACAGCCTCAATAATGTTTAAGGGCCATGAGGTATTTGAAGCTTGAATTCAGTAGAGAATAGGCCAGGCTTTGGAGTGCATTTCTGAGCTGTTACTGTGGTATTTGCAGAAAGCTTGTGACAAACATTGTAAAGACACTTTAAGGGATAAACTTTGTTGATTGTCTTACTATCTTAGTCAAAACTTATAATGGAAGATGCTTTATTTCATGATGAAAACTGTGTATTTTGAGTTATATGTACCATAATAAA

Function

symbol description
stk17b Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and positive regulation of apoptotic process. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Orthologous to human STK17B (serine/threonine kinase 17b).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K08804 STK17; serine/threonine kinase 17

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_08058976_08066474.mRNA True 1847 mRNA 0.49 7 8058624 8066778

Neighbor

gene id symbol gene type direction distance location
CI01000009_08050911_08053397 NA coding downstream 5124 8050421 ~ 8053500 (-)
CI01000009_07953250_07953748 NA coding downstream 104485 7952718 ~ 7954139 (-)
CI01000009_07625693_07637462 SLC39A10 coding downstream 421162 7625554 ~ 7637462 (-)
CI01000009_07500752_07541007 LRCH1 coding downstream 517617 7500602 ~ 7541007 (-)
CI01000009_07383927_07391805 ITM2B coding downstream 666630 7383654 ~ 7391994 (-)
CI01000009_08070105_08114631 PGAP1, HECW2A coding upstream 1921 8068699 ~ 8114867 (-)
CI01000009_08116450_08117961 NA coding upstream 49593 8116371 ~ 8118398 (-)
CI01000009_08121789_08159923 LRRFIP1A coding upstream 53941 8120719 ~ 8159923 (-)
CI01000009_08207210_08207823 NA coding upstream 140341 8207119 ~ 8207971 (-)
CI01000009_08208406_08220935 NA coding upstream 141423 8208201 ~ 8221327 (-)
G55499 NA non-coding downstream 163465 7894880 ~ 7895159 (-)
G55492 NA non-coding downstream 176541 7881763 ~ 7882083 (-)
G55430 NA non-coding downstream 239680 7818645 ~ 7818944 (-)
G55427 NA non-coding downstream 241253 7817145 ~ 7817371 (-)
G55416 NA non-coding downstream 265052 7793358 ~ 7793572 (-)
G55752 NA non-coding upstream 31729 8098507 ~ 8102665 (-)
G55823 NA non-coding upstream 101703 8168481 ~ 8232646 (-)
G55819 NA non-coding upstream 177713 8244491 ~ 8246096 (-)
G55815 NA non-coding upstream 195388 8262166 ~ 8263697 (-)
G55868 NA non-coding upstream 210765 8277543 ~ 8278157 (-)
G53515 NA other downstream 2553376 5502395 ~ 5505248 (-)
G52828 NA other downstream 3827155 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 4796667 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 5159217 2883688 ~ 2893975 (-)
G52410 NA other downstream 5496091 2551724 ~ 2562533 (-)
G55814 NA other upstream 359043 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 791374 8856310 ~ 8860563 (-)
G59097 NA other upstream 4221439 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 5908610 13975099 ~ 13978614 (-)
G59490 NA other upstream 5966786 14033564 ~ 14037873 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location