CI01000009_07500752_07541007 (LRCH1)


Basic Information

Item Value
gene id CI01000009_07500752_07541007
gene name LRCH1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7500602 ~ 7541007 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_07500752_07541007.mRNA
ATGTCGACGCTGGGACCGGAGCCCCGTCCTCATTCCCAGCTGCCTTCTGCCGCATTACAGACGAACCTGAGCGGACTGGGCTCCAACACGAACCTGCCTCTCAACCGGGGCTTGGAGAGAGCTCTGGAGGATGCGGCGAACTCTGGATTTATGAACCTCAGCTCAAGAAAACTGAAAGAATTCCCTCGGACAGCATCAAATTACGACCTAACGGATACGGTTGAAGCAGCTCACAAAGATGAAGTCATCCTTACCATTGGTAAAGGAGGAAATGGCCTTTTCTGCACATGTTATCATACAATGAGCCAGGGAGGAGACAACATCCTGCCTCTGTCTTACAGAACAAACCTGTGTTATGCTGATCTGTCGAAAAATCGCTTGATTGACATCCCGTCAGAGGTGTGTCATCTGGTCTCCCTGGAAACACTGAACCTTTATCACAACTGCATTAGAAACATTCCCGATACCATCATCAGCCTTCAGTCCCTTACCTGCTTAAACATCAGCCGGAACCAGCTGTCAGTCCTGCCAGCGTGTGTGTGTGGTCTTCCTCTGCGAGTGCTCAACGCCAGCAATAACAAACTCAACGCACTTCCAGAAAGCATTGGCCAGCTCACCAATCTCATGGAGCTGGATGTAAGCTGTAATGAAATCACAGCTCTTCCACGCCACATTGGCCAACTTAAAGCTCTGAGGGAACTCAATGTGCACCGAAACCTTCTCTGTGTTCTACCAGAGGATTTGGCAGATTTACCCCTGGTCAAGTTTGATTTCTCCTGTAATAAGGTTTCTACTATTCCTGTCTGCTATCGAAAAATGACCCAGCTCCAATCACTACAGCTGGAGATCAATCCACTTCAGAGCCCTCCTGCACAGATCTGCATGAAGGGCAAGATTCATATATTTAAATACCTCGCCATGGAGGCGTGTCGTAGTGACAAGATGGCCGATGCCTTGTACCTTCCTGTCACAGACCGCCTCAGCTTGACAAGGCCCACCAATGGGAGCACTGAGGACATTGATCAGCACAAGAAACTTGACAGTGACTCTGGGGTAGGCAGTGATAATGGAGACAAACGCCTTTCTGCTACAGAGCCTTCAGATGAAGACAGTCTCAGCTTGAATGTGCCCATGACCAACATCACAGAGGAGGAGGGCTTGAGCAAAGACGACTCCAGTGAACACATCAGCGCCCTGACAGTAGACAGAAGTCCGTCGGAATCTCTTAAGGAACGTCTGGGTTATCGAGACTCTGCACTCAGCTCTCCGTTCGTCAACTATATCAAAGGTCGAGGTGCTGACTTTGATGAGCCCCTCAGGATAGAGGAAGACACCAACTGGGCTTCAGAACAAACGTCAAAGGTCAATATGATCAATCAGCTAAAGGAAGCTGTGGAGATGCTGCAGGACCCTAACAGTGGCCAAGAGAGTGATGAGAGTCAGGCCACACCTAAGGCGGCTCCCGGAGAATGCTGGGAGTTCCAGAGGAAGAGAAAGTACATTCTAGAACGAGCCCGGCTCGAGGCCCAGCTCGCATGCCAACAGTATGCTCTGCACATGGCACAACAGGGTGATGTGATTGGCCAGGAAAGATCAGGTGATAGTTGTGAGAGCCAAGTTACCAAGCTTCACCCTCTGTGCTATGCTCGACTCCGCCCTGTCCCCTCCCACTTACACAGGCCCTGCCCACCGATAGAGACACGCCCCCTAGCCCAGCTGAAGGAGACATGCCAAGCAGTGATGTCAGAAGTTTTCCTGTGTGTTGTTTCTTTCTTTGACCTGACCCACAAGACTTTGGAGTCAGTGGATCCTCAGTTCACCATGAGAAGAAAGATGGAGCAGCTCAGAGAGGAGCTGGAGCTCATAGAGCAACTACGAGAGAGTATTGAGAGCAGACTGAAAGTAGTTCTCCCTGAAGATCTTGGCTCGTCTCTCATGGATGGGGTCGTGCTTTGTCACCTTGTCAATCACATTCAGCCGCGTTCAGTGGCCAGTATCCATGTACCATCCCCTGCAGTGCCCAAGCTTAGCATGGCTAAATGTCGCAGAAACGTTGAAAACTTTTTGGACGCCTGCAGGAAAATGGGAGTCCCTCAGTGTAACCTGCGTCCGCTCTGGGCCGTGGTCGCGGCCTTGCTCATGGTGGAGAGCACAGGAACAAGGCAGAAGGAAGGAAAGGTGGAGAGTGGCAGGGAGAGAGAGACAGAGGTCAAGAAGCTTATCCCCGAGTCCACTCAGACTCCACCTCCTTCCTGGCAAATATGGGATCTGATTGGCTCAAGTCTGCTTCACGTTTTCTGTCTGGTGATGCTGTTTGTGGCCTACAGCTGGAGCGAATTTAAATAACATACATGCACTAAAAACACAAATAACACATTATATCATTTATTGGTCCTGGAAAGCACATTGAACAGTTTCTGATGGCCACACTTAAGAAAGTCTGTCTTAAAATAGACACTGCCTGTTTTTTGAAGGAGCAAATTTTAATTTAATAAA

Function

symbol description
lrch1 Predicted to be involved in cellular response to chemokine and negative regulation of T cell migration. Predicted to be active in cytoplasm. Orthologous to human LRCH1 (leucine rich repeats and calponin homology domain containing 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_07500752_07541007.mRNA True 2496 mRNA 0.50 22 7500602 7541007

Neighbor

gene id symbol gene type direction distance location
CI01000009_07383927_07391805 ITM2B coding downstream 108608 7383654 ~ 7391994 (-)
CI01000009_07224625_07229839 NA coding downstream 269951 7224316 ~ 7230651 (-)
CI01000009_07064060_07084764 ZEB2A coding downstream 415384 7063797 ~ 7085218 (-)
CI01000009_07020336_07047155 NA coding downstream 452425 7020315 ~ 7048177 (-)
CI01000009_06913437_06917631 NA coding downstream 582971 6912470 ~ 6917631 (-)
CI01000009_07625693_07637462 SLC39A10 coding upstream 84547 7625554 ~ 7637462 (-)
CI01000009_07953250_07953748 NA coding upstream 411711 7952718 ~ 7954139 (-)
CI01000009_08050911_08053397 NA coding upstream 509414 8050421 ~ 8053500 (-)
CI01000009_08058976_08066474 STK17B coding upstream 517617 8058624 ~ 8066778 (-)
CI01000009_08070105_08114631 PGAP1, HECW2A coding upstream 527692 8068699 ~ 8114867 (-)
G55238 NA non-coding downstream 13312 7487068 ~ 7487290 (-)
G55219 NA non-coding downstream 62619 7437655 ~ 7437983 (-)
G55218 NA non-coding downstream 77007 7423367 ~ 7423595 (-)
G55215 NA non-coding downstream 103193 7397210 ~ 7397409 (-)
G55214 NA non-coding downstream 103476 7396927 ~ 7397126 (-)
G55249 NA non-coding upstream 838 7541845 ~ 7542076 (-)
G55255 NA non-coding upstream 20496 7561503 ~ 7561817 (-)
G55256 NA non-coding upstream 21187 7562194 ~ 7562417 (-)
G55257 NA non-coding upstream 23102 7564109 ~ 7565005 (-)
G55259 NA non-coding upstream 32402 7573409 ~ 7573608 (-)
G53515 NA other downstream 1995354 5502395 ~ 5505248 (-)
G52828 NA other downstream 3269133 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 4238645 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 4601195 2883688 ~ 2893975 (-)
G52410 NA other downstream 4938069 2551724 ~ 2562533 (-)
G55814 NA other upstream 884814 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 1317145 8856310 ~ 8860563 (-)
G59097 NA other upstream 4747210 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 6434381 13975099 ~ 13978614 (-)
G59490 NA other upstream 6492557 14033564 ~ 14037873 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location