RNA id: AMCG00000776


Basic Information

Item Value
RNA id AMCG00000776
length 3933
RNA type mRNA
GC content 0.65
exon number 28
gene id AMCG00000776
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3083455 ~ 3103231 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCCTCTGCGCGGGAGCACCTTATGTTCGTGCGCCGCCGCAGCCCCCACATGCGCTACACGCTGAGCCCCGAGAACCTGCAGAGCCTGGCGGCCCAGAACGCCGGCCCGCCCGAGACCATGGGCTTCCAGCGCGCCAACAGTGACACCGACCTGGTGACCTCGGACAGCCGCTCCTCGCTCACCGCCAGCACCTACGAGTTCACGCTGGGCCTGGCACAGAACCTGATCATCTCCTGGGACATCAAGGAGGAGGTGGACGCCACGGACTGGATCGGGCTGTACCACATCGATGAGACCTGCCCCACCAACGTGTGGGACTCCAAGAACCGCGGGGTGAACGGCACGCAGAAGGGGCAGATCGTCTGGCGCCTGGAGCCCGGGCCCTACTTCATGGAGCGTGAGTCCTTGGGAGACAGggagatgattattattactgtctCACATGctgAGACGAAGATCTGCTTCAAGTACTATCACGGTGTGAGCGGCGCCCTGAGGGCCACCACCCCCTGCATCACGGTCAAGAACCCCGGCGTGCTGgtggggGCGGAGGGGCTGGCGGAGGGGGAGTCTGTAGCCGAACACTGTCGCAAACTGGTCAGCTTCACTCTGTCAGATATCCGTTCCCTGGGGTTAAAGAAGGGCATGTTCTTCAATCCCGACCCCTATTTGAAGATCCCGGCAAAAAGAGCACCTTCCTCACTTTCGCCCACCACGGACAAGTTCGCCAAGAGCCGCCCCATCATCAAGCGCTTCCTGGGAAAGCTGGTGATCCCGGTGCAGAGACTCCTGGAGCGCCACGCCGCGGGGGACCAGCCCATCAGCTACACGCTGTGCCGCCGGCTGCCCACAGACCACGTGAGCGGGCAGCTGCAGTTCCGTGTGGAGGTGGCGTCTGCGGGGCACGAAGACGCCTCTCCAGATGCCATGGGTTCTCTCTTGGGGGCCTCTGCGGTGAATGGGGATCCCGGGAGCCCCTCTGATGATGAGGACATGCCTGGGGGCCCTCACCCTCCTCCCGGGACTGCCAGGGGCCCCTCCCCCACAGGCTCGGAGGGCTCCCTGCCCGGCGAGGCCCTGCGCAATGGGGAGGtgcgggtggtggaggaggaggagcccctgggggtggagggggcCGAAGGTGGTGCGGAGGGCAGCTCGCCGTCCCGCTGTATCCACACACTGCGCCAGGAGTCTCTGAACGACTACCTGGACGCCATTGAGGCCCCCAAGGCCCCCGGGGAGCGGCCCCTGGGCGCCGCCTCGCCAAAACTGCGCAGCAGCTTCCCCACGGACACACGGCTCAGCGCCATGCTGCACATCGACTCggacgaggacgaggagggTGGGCTGCTGCCCGAGGCGGGGGCAGAGTCCGAGGGGGGTCTGATGCTGCTGCTCAACGGGGGGCTGGAGGGGATGCCCCCCAGGACCGCAGAGGTGGGGGAGATGGAGGCGCCGCTGCAGCAGCCGGCTGAGGACACCGAGGGGGGGACCACGGCNNNNNNNNNNCCGGCCAGCGAAGGGGAGCCGCCCCCCAACAGCCCCCCAGAACCCGAGGGACAGGAGGGGCCGGAGGAGCCGGAGCCGGGGGGGTCCAGCCAGGAGCAGGAGAGCGAGGTGACGGAGGGCGGCCCCAGCTCGGGCACGGGGACCACGCGCCAGTCCTCCACCGGCTGCTCCTCCTTCGACAGCACGCGCTACCCGGCCTCATCCTCGCAGgaggaggaggaagggccGGCGGCCTCCACCGAGTCGGGCGGCGCCCCCTCCTCTGAGGTCACGCCCACCACCAGTGACGTTGCCGACGAGGGCGGAGGGGCGTCTCAGGCCACCGGGGGAGGGGAGGAGCTTCAGGGAGCCACGGCAGCCAATgtggacgaggaggaggaggagatctGGCAGAGGAGGCGGAGTCTACAGGCGGCCGGTGGGGAGTCGCAGGAAGAGGAAGTGAGGTCGGCCGGCGCTAGTGGCTCGATGGACTCGGGCCAGAGCGCCACTGAGACGGATGGAGACACAGaCTGGGAGGCGCGCATCGACAGTCATGGGCGGATCTTCTATGTGGACCACGTGAACCGGACCACCACCTGGCAGCGGCCCAccgcccccccagccccacaAGTCCTGCAGAGGTCCAACTCCATTCAGCAGATGGAGCAGCTGAACCGCAGGTATCAGAGTATCCGGCGGACGATGACGAATGAGCGTGCGGAGGACCAGGCCCCCGAAATGCCCCCCGAGGACAGCGACCTCATGCACCACACCATCCCAGAGTACCGGCGAGATGGCGCGACGCCCCCCTCCAGCTCGCGCTCCCGGCTCAGCCTCCTGCTCCAGTCGCCCAGCGCCAATGCCTACCGCCTGTTCACGAGCAACTCGTGTCTGAAGCACATGATCAGCAAGGTGCGTCGGGACGCCCACCACTTCGAGCGCTACCAGCACAACCGCGACCTTGTCACCTTCCTCAACATGTTCGCCAACAAGCAGCTGGAGCTGCCGCGTGGCTGGGAGATGAAGCACGACCACACGGGCAAGAGCGCGCGGCCCAGCAGCCTGTTGGCACATCGCCAGCACCTGACCCGCCAGCGCAGCCACAGCGCCGGGGAGGTGGGCGATGACTCTCGGCACGCCGGTCCCCCTGTCCTCCCGCGCCCCTCCAGCACTTTCAACACGGTCAGCCGCAACCAGTACCAGGACCTGGTGCCTGTTGCGTACAATGACAAGATTGTGGCATTTCTTCGGCAACCCAACATCTTCGAGATCCTACAGGAGAGGCAGCCGGAGCTGATCAGAAACCACCCACTCAGggaGAAGGTGCAGTTCATCCGCAGCGAGGGCGCTCCCGGCCTGGTGAGGCTGTCCAGTGACGCTGACCTCGTCATGCTACTCAGCCTGTTTGAAGAGGAAGTGATGTCGTACGTGCCGCCCCACGCCTTGCTGCACCCCAGCTACTGTCAGTCCCCGCGCGGCTCGCCTGTCTCGTCGCCACAGAACTCTCCAGgTACCCAGAGAGCGAACGCCCGGGCCCCTGCGCCCTACAAGAGAGACTTCGAAGCCAAACTGCGCAACTTTTACCGCAAACTGGAGACCAAGGGTTACGGGCAGGGTCCAGGCAAGCTTAAGCTGATTATCCGCAGGGATCACCTCCTGGAGGACGCCTTCAACCAGATAATGGGCTACTCCCGCAAAGACCTGCAGAGGAACAAGCTCTACGTCACCTTCCTGTTCAACCCCTACTACGGCCTGTTTGAGTACTCCGCCAACGACACCTACACTGTGCAGATCAGCCCCATGTCCGCCTTTGTCGACAACCACCACGAGTGCCCCTGTGACCTAAGTGACCTGGAGTACCTGGACGAGGAGTTCCACCAGAGCCTGCAGTGGATGAAGGACAATGACATCAACGACATGTTGGACTTGACCTTCACTGTCAACGAGGAGGTCTTCGGGCAGATCACGGAGCGCGAGCTGAAGCCCGGCGGCGCCAGCATCCCTGTGTCTGAGAAGAACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGCATCGAGAGGGGCGTGGTGCAGCAGACTGAGAGCCTGGTGCGCGGCTTCTACGAGGTGGTGGACGCCCGGCTGGTGTCTGTGTTTGACGCCCGGGAGCTGGAGCTGGTGATCGCCGGCACGGCCGAGATAGACCTGAGCGACTGGAGGAACAACACTGAGTACAGAGGAGGTTATCACGACAACCACATAGTGATCCGGTGGTTCTGGGCGGCGGTGGAGAGGTTCAACAACGAGCAGCGGCTGCGGCTGTTACAGTTTGTGACAGGTACGTCCAGTATCCCGTACGAGGGTTTTGCGTCTCTGCGGGGCAGTAACGGCCCCCGCAGGTTCTGTATGCTGACCGCTGTGGAGGAGACCAGCACCTTCGGCCTGGAGTGA

Function

GO: NA

KEGG:

id description
K12168 HECW2; E3 ubiquitin-protein ligase HECW2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158015 lncRNA downstream 525206 2557991 ~ 2558249 (-) True G126037
TU157974 lncRNA downstream 563235 2427941 ~ 2520220 (-) True G126005
TU157998 lncRNA downstream 620967 2460715 ~ 2462488 (-) True G126020
TU157778 lncRNA downstream 1255713 1822252 ~ 1827742 (-) True G125875
TU157743 lncRNA downstream 1506109 1575361 ~ 1577346 (-) True G125845
TU158101 lncRNA upstream 30645 3133876 ~ 3135913 (-) False AMCG00000777
TU158325 lncRNA upstream 447609 3550840 ~ 3552977 (-) True G126275
TU158314 lncRNA upstream 449816 3553047 ~ 3656561 (-) True AMCG00000804
TU158357 lncRNA upstream 571050 3674281 ~ 3676927 (-) True G126296
TU158437 lncRNA upstream 1141498 4244729 ~ 4245041 (-) True G126369
AMCG00000775 mRNA downstream 4912 3065810 ~ 3078543 (-) True AMCG00000775
AMCG00000770 mRNA downstream 27576 3052881 ~ 3055879 (-) True AMCG00000770
AMCG00000771 mRNA downstream 33439 3044167 ~ 3050016 (-) False AMCG00000771
AMCG00000765 mRNA downstream 545587 2520235 ~ 2537868 (-) True AMCG00000765
AMCG00000763 mRNA downstream 684100 2394089 ~ 2399355 (-) True AMCG00000763
AMCG00000778 mRNA upstream 18977 3122208 ~ 3123800 (-) True AMCG00000778
AMCG00000777 mRNA upstream 30962 3134193 ~ 3140489 (-) True AMCG00000777
AMCG00000785 mRNA upstream 78248 3181479 ~ 3205611 (-) True AMCG00000785
AMCG00000784 mRNA upstream 130190 3233421 ~ 3237636 (-) True AMCG00000784
AMCG00000788 mRNA upstream 173027 3276258 ~ 3314125 (-) True AMCG00000788
TU158081 other downstream 33504 3044257 ~ 3049951 (-) True AMCG00000771
TU158078 other downstream 41491 3036931 ~ 3041964 (-) True G126089
TU157991 other downstream 625572 2451868 ~ 2457883 (-) True G126017
TU158093 other upstream 28483 3131714 ~ 3133817 (-) False G126096
TU158094 other upstream 28483 3131714 ~ 3149252 (-) True G126096
TU158313 other upstream 549426 3652657 ~ 3656561 (-) False AMCG00000804
TU158503 other upstream 1532865 4636096 ~ 4636516 (-) True G126427
TU158856 other upstream 2469474 5572705 ~ 5573027 (-) True G126700

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073126 False 9885 mRNA 0.46 28 NC_007120.7 24159280 ~ 24192145 (+)
grasscarp (Ctenopharyngodon idella) CI01000009_08070105_08114631.mRNA True 8560 mRNA 0.50 55 CI01000009 8068699 ~ 8114867 (-)