AMCG00000825 (LOC107714772,LOC106574437,LOC104928565,LOC106575257)


Basic Information

Item Value
gene id AMCG00000825
gene name LOC107714772,LOC106574437,LOC104928565,LOC106575257
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4646961 ~ 4651113 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000825
ATGCCTGGAAAGAAAGTTTGCATCATTGGATCTGGAAACTGGGGATCTGCTATAGCCAAGATTATTGGGCGGAATGTCACCAAGTCCAACAGGTTTGACCCAATTGTTAAAATGTGGGTTTATGAAGAAATGGTGGATGGAAAAAAGCTCACAGAGATAATCAACACAGagcatgaaaatgtgaaatatctgcCTGGACACAAGCTGCCAAAAAATGTTGTTGCAGTGCCAGACGTGCTGGAGGCGTCGGCTGGCGCAGACATCCTGGTGTTTGTCATTCCTCATCAGTTCATTGGGAAATTGTGTGATCAGATGAAGACCCAGGTCAAACCAGGGGCCATTGGCATCTCTCTGATCAAGGGCATTGACGAGGGCCCCGATGGTCTGAAGTTCATATCCCACATCATCCAAGAGAAAATGGAGATAGAAGTCAGCGTGTTGATGGGCGCCAACATCGCGAATGAAGTGGCAGATGAGAAGTTCTGTGAAACAACCATAGGGTGCAAGAACGAGCAGCACGGCCGGATCTACAAGGACCTTCTGCAGACTCCCAACTTCAGGATCACTGTGGTGAAGGAGAGCGACACGGTGGAACTGTGTGGGGCGCTGAAGAATATCGTGGCGGTCGGGGCTGGCTTCTGCGACGGCCTCGGCTTTGGCGACAACACCAAGGCGGCCGTGATCCGCTTGGGGCTGATGGAGATGGTGGCGTTTGCGAAACTGTTCTGCAAGGGCAGTGTGACCTCGGCCACCTTCCTGGAGAGCTGCGGGGTGGCCGACCTGATCACCACGTGCTACGGGGGCCGCAACCGGAAGGTGGCGGAGGCGTTCGTGAAGACGTCCAAGTCCATCGAAGAACTGGAGAAGGAGATGCTCAACGGACAGAAGCTGCAAGGTCCGCAGACGTCCGCCGAGGTGTACAAGATCCTCAAACAGAGGGACATGACTGACAAGTTTCCGCTGTTTACGGCCGTCTATCAGATTTGCTTCGAGGGCAGACCTGTTCAAGACTTCATCATATGCTTACAAAGCCACCCGGAGCACATGTGA

Function

NR:

description
PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046168 glycerol-3-phosphate catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009331 glycerol-3-phosphate dehydrogenase complex cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity molecular_function

KEGG:

id description
K00006 GPD1; glycerol-3-phosphate dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000825 True 1050 mRNA 0.53 8 4646961 4651113

Neighbor

gene id symbol gene type direction distance location
AMCG00000820 NA coding downstream 182217 4429747 ~ 4464744 (-)
AMCG00000821 NA coding downstream 242820 4401739 ~ 4404141 (-)
AMCG00000817 NA coding downstream 259241 4380615 ~ 4387720 (-)
AMCG00000818 actr3,LOC107660280,LOC106575261,LOC104923131,LOC101155832 coding downstream 320384 4317018 ~ 4326577 (-)
AMCG00000813 NA coding downstream 558065 4067944 ~ 4088896 (-)
AMCG00000824 NA coding upstream 18155 4669268 ~ 4683641 (-)
AMCG00000836 NA coding upstream 213087 4864200 ~ 4938788 (-)
AMCG00000835 arl5a,LOC107555355 coding upstream 293104 4944217 ~ 4954174 (-)
AMCG00000839 NA coding upstream 363256 5014369 ~ 5024891 (-)
AMCG00000842 sec22a,LOC107722877 coding upstream 469994 5121107 ~ 5132844 (-)
G126432 NA non-coding downstream 3495 4642680 ~ 4643466 (-)
G126430 NA non-coding downstream 5620 4641058 ~ 4641341 (-)
G126429 NA non-coding downstream 8676 4637958 ~ 4638285 (-)
G126428 NA non-coding downstream 9321 4637367 ~ 4637640 (-)
G126369 NA non-coding downstream 401920 4244729 ~ 4245041 (-)
G126445 NA non-coding upstream 52026 4703139 ~ 4708851 (-)
G126476 NA non-coding upstream 122468 4773581 ~ 4777784 (-)
G126554 NA non-coding upstream 362755 5013868 ~ 5034697 (-)
G126563 NA non-coding upstream 464941 5116054 ~ 5119036 (-)
G126631 NA non-coding upstream 721136 5372249 ~ 5372459 (-)
G126427 NA other downstream 10445 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 990400 3553047 ~ 3656561 (-)
G126096 NA other downstream 1497709 3131714 ~ 3149252 (-)
AMCG00000777 coq10b,LOC107690612 other downstream 1506472 3133876 ~ 3140489 (-)
AMCG00000771 nabp1,nabp2,LOC106581684,LOC107718374,LOC106575791,LOC107557546 other downstream 1596945 3044167 ~ 3050016 (-)
AMCG00000838 cacnb4,LOC108434427 other upstream 306025 4957138 ~ 4982651 (-)
G126700 NA other upstream 921592 5572705 ~ 5573027 (-)
AMCG00000888 LOC102209482 other upstream 2038455 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 2978802 7629915 ~ 7645722 (-)
G127292 NA other upstream 4767883 9418996 ~ 9419325 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000117_00229461_00235903 GPD1C coding CI01000117 null 229214 ~ 235976 (+)