AMCG00002080


Basic Information

Item Value
gene id AMCG00002080
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2906865 ~ 2910535 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002080
AGAGAGAAAGACTGAACCTTCGACAAGAATCCCCTTAAAGCAGAATCCAATAAGCATTAACAATCTCTTTTACATTTAGTCCTTCAAGATAAGAAATGAGTTCTCTGCTGTTTGGAGTGGAGGGGTCAGGATACATCAAGATGGGACTGCCCCCAGCAGCATACAGCGACAGCTTTAGTTCGGGAGCCAAGCACATCGGATATCTGAAAGGCTTCTCTCATGTCCTGTTCAGTCCAGATGGGACAATGTTTGCCATCCGTGGAGCAGAAATCTACTGTGGGCCTCCCCCCTCAAATCCAAATGAAGACTGGCTGTCCACCAATGCAAAATGTGTTGGAAGAGCTGACTGGAATGGAGCGAGATTGCTCTTCTTCCATCCAGACGGCACGCTCTATGTCATTACAAATGACCAGCAATTGTACAAGGGCCCTTCCCCCGACAACATGCATGTGTCCTGGCTCTATAGGGTGGCCACCAAAATAGGAAGCAGAGGCTGGGACTTTCCTAGAGTATTTTTTGATCCCCAAGGCATGATGTACGCAGTGACTAAGCAGGGAAAATTAGTTAAAAGGATGCCACCAAAACATGCAAATGATCAGTGGCTGAAAAGCAGTGAGACCATTGGAAGCAGTGGGTGGGCTAAACTCACCCATTTTATGGCCTTCTCTGATGATGGCAATTTATGGTGCGTCTCAGATGTGGGGGGTAACATCTACTCTGCTCCACCACCTAGAAACGCCAATGTCAGTTGGATTAATGGAGCACAGAAGCTTGGCTATAACTACAACCGTTACAAGATCCTCGCATTCACAGAAGATAAAACTATCAGCAAGGTTTTGGGTATGGATTTTGATGTTGACAATGCAAACATCCTCTCAGTCAAACCCATGATTGTCGGGCAGCAGGACTATGACAACACCAAAGGCATCGTCCCATACGACACCACATTCCAgttttctgAAAAGGTGACTCTGGAAAGTACCTTCTCCCATCAGCATGGGTTCACTTTTGCAGTTGGAGCATCAACAACCTTTAAAGCTGGAATCCCAATGATTGCACAGAATGAAACCACTGTCAAGCTTGATATCAGCACAACCAACACGTGGAATTTTGTGGAGACTGAACGAACAGAGATTGTAAGCGTTTCCTCCATAAAGGTGACGGTGCCCCCGGGCAAGGCTTTGAGATTCAAGGCCCTCGTTCAGAAGGGAGAAATGGATGTTCCTTACAAAGCCCAGGTTGTCACCGAGTTTGGACACAAGACCACCGTCAGAGGAATGTGGAAGGGGGCCTCAGTGTCCAGGGTGGAAATTGAGCAACATAACATTACAGATGAACAAGTGAAGTAAACTTTGATCAGTAAATCACAGACCTTCCTTTGCTACACAAATGGAAGCTTGGGTTTCCAATATCAATATACCCGTTACAGGCAATGTTAAACTCTCACgaaataatgttaaatgatttatctttatcttttcACACTGTGCAACCTTTACCCAACAACCTACTTGcttaaattaattcatactccaaattcatatttataagAGAAGCATTAAGAGACATGAATTCATCAGTTTAGTGTGTGTTACCCCTGCATGGTACGGATGGATCCGCAGGTTGAGTTGTTGTattgcaagtaaaatcaatgatgctttgcttttgctttatttagCTTTAGTCTAAATGCTGGAATTGCATAACTTACTTTGATCTAAAAAGGTTTAAATCTtgatcaataaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002080 True 1748 mRNA 0.44 4 2906865 2910535

Neighbor

gene id symbol gene type direction distance location
AMCG00002073 ppcs coding upstream 45079 2857667 ~ 2861786 (+)
AMCG00002074 rimkla,LOC106567384 coding upstream 64902 2831684 ~ 2841963 (+)
AMCG00002075 NA coding upstream 89893 2816757 ~ 2816972 (+)
AMCG00002060 NA coding upstream 655726 2248017 ~ 2251139 (+)
AMCG00002059 NA coding upstream 686081 2216551 ~ 2220784 (+)
AMCG00002081 LOC106572212 coding downstream 36931 2947466 ~ 2952329 (+)
AMCG00002082 NA coding downstream 56830 2967365 ~ 2986779 (+)
AMCG00002088 ybx1,LOC100194660,LOC107733967 coding downstream 84843 2995378 ~ 3004718 (+)
AMCG00002087 NA coding downstream 114529 3025064 ~ 3040023 (+)
AMCG00002086 NA coding downstream 174477 3085012 ~ 3087293 (+)
G120692 utp3,LOC102785935 non-coding upstream 40841 2861915 ~ 2866024 (+)
G120674 NA non-coding upstream 210458 2696064 ~ 2696407 (+)
G120602 NA non-coding upstream 680885 2225780 ~ 2225980 (+)
G120566 NA non-coding upstream 703494 2202617 ~ 2203371 (+)
G120565 NA non-coding upstream 721885 2184780 ~ 2184980 (+)
G120755 NA non-coding downstream 130032 3040567 ~ 3042435 (+)
G120763 NA non-coding downstream 133105 3043640 ~ 3046804 (+)
G120774 NA non-coding downstream 181259 3091794 ~ 3092899 (+)
G120778 NA non-coding downstream 189072 3099607 ~ 3100142 (+)
G120779 NA non-coding downstream 189743 3100278 ~ 3101046 (+)
AMCG00002076 NA other upstream 52738 2852154 ~ 2854127 (+)
G120518 NA other upstream 966049 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 1914101 682670 ~ 992764 (+)
G120742 NA other downstream 46373 2956908 ~ 2959475 (+)
AMCG00002098 NA other downstream 623279 3533814 ~ 3542177 (+)
AMCG00002152 NA other downstream 2308295 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 3676119 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 4483265 7393800 ~ 7411230 (+)

Expression


Co-expression Network