AMCG00002509 (eaf1)


Basic Information

Item Value
gene id AMCG00002509
gene name eaf1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17092906 ~ 17097083 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002509
GTTTGCACTCAGTTGGGCCTGTtttgaaattggaaatattAGGTTATTTTTATGCGATTGCGAAGGAAATCATTGtagataaatgttttttgttttattactattttttaattaatgtgaatCGTCCATTAAAATCGGAAATATGAATGGGAGTTCCAACCCGCTGTTAGATAAAGAGGAGCATGTTTTGAAGCTTGGGGAGAGCTTTGAAAAGCGTCCAAAATCATCATTTCATACCATCAGATATGATTTTAAACCAGCGTCCATCGACACATCATGTGAGGGTGAACTCCAAGTGGGAAAAGGAGATGAAGTCACAATCACGTTACCTCATATTCCGggCTCCACACCCCCCATGACAGTGTTCAAAGGTAACAAAAGACCATATCAGAAGGATTGTGTGCTCATCATTAACCATGACACTGGAGAGTTTATGCTGGAGAAGCTCAGCAGCAGTATACAAGTGAAAAAAACCAGAGCTGAAGGCAGCAGTAAAATCCAGGCGCGAATAGAGCAGCAGTCAGTCCGGGCCACTCAGCCTCCCTCGCAGTTCAGAGCCCCAACCAAGCCTGGTGCCGGAGCCAAGACCTCTCCCTCCAAGGACAACCCATCCCCTGAGCCCCAACTGGATGACATTAAGAGAGAGCTGCGTGCGGAGGTGGAGATCATTGAGCAGAtgagcagcagcagtggcagcaGCTCGTCGGACTCGGGCAGCTCCTCGGCCAGCGAAGACGACAGCTCCAGCAGTGAGGGCGAGCAGGAGGCCGcccacccctcccccacatCTCACCAGCAGCACAGCGCCAGGAACCCGGCCTCCAACGGCACCGGGCGAGCGCAGGGCAGCAACCAGCTCATGAGCACGCTGAGGAACGACCTTCAGCTCAGCGAGTCTGGAAGTGACAGCGATGACTGAGCCCCTTTGCAGTGAATAGAGCCCTGAAGATGCATCACTATTGGCtcgttttattgtgttttaatatcgCACAAAGCTGCCCATCTTTGAGGTGTTTTAGATTGTATTTTCTtagctgtatattttttcttttttttacttgaagATGAAATCCTCTAACATGAGCAAAGTTGGCttggaaaatatgaatatgcataCTCAAGGAGGTTTAGTGTCACCGGGTGTATCAACGATGTTATTATAACATACGGACAAATCAACAATAATATGCTacttgttaaaacaaaaaaatattcacaACTGTTCTCCTCTTACAGATCTAAAGGGATTGCTAAAAGCCAGTGTAGAAATACTATTGCACTTTGTGTTTTATATCAGGGTCACCAGGATGAagctctttttaaaaaaaaaaatatatatatatatatatatatatatatatatatatatttctaaacgTGTTCCACAATGTTAATTTGACGTACAatctgg

Function

symbol description
eaf1 Enables armadillo repeat domain binding activity; beta-catenin binding activity; and chromatin binding activity. Acts upstream of or within several processes, including animal organ development; cell migration involved in gastrulation; and convergent extension involved in axis elongation. Predicted to be located in nucleus. Predicted to be part of transcription elongation factor complex. Is expressed in several structures, including blastoderm; blastodisc; nervous system; pleuroperitoneal region; and presumptive neural retina. Orthologous to human EAF1 (ELL associated factor 1).

NR:

description
PREDICTED: ELL-associated factor 1

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0030111 regulation of Wnt signaling pathway biological_process
GO:0014812 muscle cell migration biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031016 pancreas development biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0032783 super elongation complex cellular_component

KEGG:

id description
K15186 EAF; ELL-associated factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002509 True 1411 mRNA 0.44 6 17092906 17097083

Neighbor

gene id symbol gene type direction distance location
AMCG00002508 mturn,LOC107572558,LOC107559763 coding downstream 2592 17080504 ~ 17090314 (-)
AMCG00002504 NA coding downstream 20981 17063407 ~ 17071925 (-)
AMCG00002505 NA coding downstream 40100 17021419 ~ 17052806 (-)
AMCG00002492 tmem158,LOC102794155 coding downstream 244790 16847424 ~ 16848116 (-)
AMCG00002490 NA coding downstream 261635 16824229 ~ 16831271 (-)
AMCG00002510 capn7,LOC107705521,LOC107755679 coding upstream 40093 17137176 ~ 17158023 (-)
AMCG00002514 NA coding upstream 86318 17183401 ~ 17185908 (-)
AMCG00002516 NA coding upstream 210183 17307266 ~ 17308556 (-)
AMCG00002515 pik3r4,LOC107556101,LOC107588487 coding upstream 257567 17354650 ~ 17371962 (-)
AMCG00002518 NA coding upstream 319054 17416137 ~ 17423894 (-)
G123646 NA non-coding downstream 17357 17075312 ~ 17075549 (-)
G123642 NA non-coding downstream 42850 16995129 ~ 17050056 (-)
G123637 NA non-coding downstream 110260 16980831 ~ 16982646 (-)
G123527 NA non-coding downstream 438043 16653499 ~ 16654863 (-)
G123524 stt3b,LOC108412618 non-coding downstream 441452 16648407 ~ 16651454 (-)
G123705 NA non-coding upstream 137287 17234370 ~ 17238544 (-)
G123788 NA non-coding upstream 562984 17660067 ~ 17675110 (-)
G123824 ctnnb1 non-coding upstream 714435 17811518 ~ 17815466 (-)
G123845 NA non-coding upstream 954014 18051097 ~ 18052332 (-)
G123876 NA non-coding upstream 1108585 18205668 ~ 18206132 (-)
AMCG00002503 NA other downstream 118605 16958162 ~ 16974301 (-)
G123585 NA other downstream 253184 16836156 ~ 16839722 (-)
G123263 NA other downstream 2146595 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 3438659 13649227 ~ 13654247 (-)
G122862 NA other downstream 4063500 13028197 ~ 13029406 (-)
AMCG00002524 NA other upstream 592925 17690008 ~ 17706289 (-)
G123829 NA other upstream 825369 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 836381 17933464 ~ 18041573 (-)
AMCG00002584 NA other upstream 4549972 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 4804209 21901292 ~ 21902597 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location