AMCG00002510 (capn7,LOC107705521,LOC107755679)


Basic Information

Item Value
gene id AMCG00002510
gene name capn7,LOC107705521,LOC107755679
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17137176 ~ 17158023 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002510
TTCATGGGTTTGTTGTTATCTCAAAACTTTCAGCTcaagaaggaaagagaaaaagaaacaacgGGGGATATTCTGACAGGACAGGGTTATAGTAGCACATAAATACGTTTAAAAAACAGGCAATTACAGAAAAAGCAATTGTTAACTGCCGCACATTGAGCCTATTTGGAGCACATTCAATCGGCTAAAGCTGTTTTGTCATCAAGCGGAGATTAAGCAGGATGGGAGAGACGCTGATGTCGCCCTCACAGCAACAGTGATAGATTTGGGtttgtccgtctgtctgtctgttttcacGTCAAAAAGCCAAGAAAGACACACAATCATGGATGCTACAGCGCTGGAGCTCGATGCCGTGAAATTCGCCAAATCCGCCGTCTTCCACGATCAAAATGGGAAATACCAGGAAGCGGTGTTTTATTATAAGGAAGCTGCTCAGGCCTTGATCTACGCTGGCATGGCCGGCTCCAAACTAGAGAAAATTCAGGAGAAAGCCAATGAGTACCTGGACAGGGTGGAGTCTCTtcactcggcagTGCAGGCACAGAGCAGCGACCCCCTGAAGTCCAAGCATCAGCTGGACTTGGAGCGCGCTTACTTCCTGGTTACACAGGCGTTTGAGGAAGATGAGAATGGGAACACAGATGAGGCCATTGAGCTCTACACTCAAGCCGTGGAGCTGTGTATACCAACGGCCAACGAGACGACTGACCAAGCCCTCCAAGGGAAGCTGAAGCAGCTGGCTCGGCAGGCCCTGGAACGAGCAGAGGGGCTGAAAGACTCCATGTCCAAACCTGcccagagggagagagcagctCCCTCCAAACCCATAAACCAAGTCAGACCCTACCTGCCCCTGGGACCCGACTTCTCCCTCCATGACAAACCCCAGGGGGTCCGGCCGGTCCAGTCCTGTGAGCCGCAGGGGGAGAGGTACACCGCTGAGGAGATCGAAGTGCTCAGGAATACCTCAAAGATTAATGGCATCGAGTTTGTGCCTTTCATGCGCGTGGATTTGAAGGAGCGCTTTGCCTTCCCTGTTCCCTTTTCAGACAAATGTGGCAAGTTAGCCCTTTCCCCCAAACAGAAAGCAATCTTCTCCCGATGGGTTCGACCGGACGATATCTGTAACAATCCCACCATGATCTTTACTGTCTCCAGCTTCAGTATCAAGCAGaCAGTGGTGTCGGACTGTTCGTTTGTCGCCTCGCTGGCCATTAGTGCCGCCTACGAGAGACGGTATAACAAGAAGCTGATCACAAGCATTATTTATCCCCAGAACAAGAGAGGAGAGCCAGAATATAACCCATGTGGAAAATACATGGTCAAGCTACACATCAATGGAGTTCCCAGGAAGGTTATCATTGATGACTACCTGCCGGTGGATCACAACGGGGAGCTCCTGTGCTCCTACTCCAGCAATAAGAACGAGCTGTGGGTGTCCCTCATTGAGAAGGCCTACATGAAGGTCATGGGTGGATATGATTTCCCCGGCTCAAACTCGAACATTGACCTCCACGCGCTGACCGGCTGGATTCCTGAACGGATCGCCATGCATTCGGACAATCAAGCTTTTAGCAAGGATGACACTTTCCGAATGCTGTATCAAAGGTTTCACAAAGGCCATGTCCTTATCACAACAGCCACAGGAGTGATGACAGAGGAGGAGGGCGAGCGACGGGGCCTGGTGCCCACACACGCTTATGCAGTCCTGGATGTCAGAGAATATAAGGTATGGATCCGAGCTAGTCCTGAGCAGTATCGCAGCCGTGGCTTGAGAAGCGGTCACATGTCTCGCATGAACATGGGTCAGCTTTGCTCTGGAAATCGCTTCCTTCAGCTCAAAAACCCCTGGAGTCACCTGCGATGGAAGGGCCGTTTCAGTGAACGAGATGAGAAAAGCTGGACACCCGAACTCCTCAAATACCTCAACTTTGACCCCAAAATGGCACAAAAATTCGACAATGGGGTGTTCTGGATCACCTGGGAGGACCTGTGCCAGTACTATGATGTCATATACTTGAGCTGGAGCCCGTCTCTGTTTAAAGAATCCTCCTGCATTCACAGGTTGGTAGAACTTCATAGCACTTGGGATGGGAAGCAGGGCCCAGTGAAAGACGCCTACAGCCTGGCTAACAACCCGCAGTATAAATTGGAGGTTCAATGTCCACAGGGGGGCGCTGCCGTCTGGGTCCTACTCACCAGACACATCACAGACAAGGATGACTTTGCCCAAAATCGAGAGTTCATTACCCTGGTTGTGTACAAGACCGATGGGAAGAAAGTCTACTATCCGTCTGACCCTCCTCCGTACATCGATGGGATACGAATCAACAGCCCCCACTACCTGACCAAAATCAAACTGACAAGTGCAGGGACCCACACGTTCACTCTGGTGATGTCACAGTATGAGAAGCAGAACACCATCCACTACACTCTAaggGTCTACGCTGGATGCAAATTTAACTTCTCAAAAATCCCTACCCCCTACACTCAATCCAAGAGGATCAATGGTCAGTGGAAAGGCCAGAGCGCCGGTGGCTGTGGGAATTACAAAGAGACATACAAGCACAACCCCATCTACCAGCTCCAGCTGGACAAGCCAGGGCCCGTGCTGATTGAACTGCGGGGATCCAGGCAGTACAGTGTGGGCTTTGAGGTGATCACAGTGTCCACCATGGGAGATCCTGGCCCCTCAGGTTTTCAGAAGAAGACCAGCGGAGATTACCGgTGTGGCTTTTGCTACATGGAGTCGGACTACATACCTGCCGGAGTTTACAACATCATTCCCACCACTTTCCTCCCCAATCAAGAGGGACCTTTCTTTCTGGACTTCAACACTACCGTGCCAGTCAAGGTATCCAAGCTACAGTGAGGTATCTGCCAAAGCAGAGCATTCTCAGGATGCATGGCACCCTTTCAGGCAAGGAGTGGCCCTGGTTAGGTTTAGGCCACCAAAGATCATTCCTGTAAGTTTTGTAAAATGCCACTGTTGGGGGACATTTTAATCGCTGGGGAAGACTGTGTGGCCATGTtctcaaaccaaaaaaaagaaaaaaaactggaagggaaaaggaaaaaagatcGATCGATCTCTGGACACACCTGCCTCACAATCCTACACTTGTGTCTATAAACCCAAACCATCTGCCATCTTGCCCTGCCCTCATCCGGTAACGTCATGTTTTTGTCACCACGGTAGCTGAAGGGTTACACAGAGGTATGAAACACAGtgactgactcacacacacacgcgttcAGGCTGAATTTCTCAGTTTTCTGAATCATGTCTTGTCTTTGGGCTTAATGCACTTAATTGTATTATCATGtttgttattctttctttctctctttctgctaATCTCATGTGTCCCTGTGTTAGGGCTTATAAGGGCTTTTATGAGTCACTTGAATTCAGTGCGAATTTTTTTTGCGATGCATGCTTGCTTTTCATTGAAGCGTAAACCCCAGACTTGCACAACCCACCAATCCTGCGTTGGGCACAAACTGTCtgttaatgaaaagaaaaaagcttggttgacttatttttatttgaataccttTGATGCTGGATTCCTTATTATTCTTATGTAAAATTCTATattaatctatatttatataaatgttatcaTTTGCTTGGTTATAATGCAAGTACGCTTTACTAAGCCCCATGCCAACCTGTCAAAAAGGTACTTACTTGATTTCTATGCACTTGTACATTATGACACTTACTGTATtggataaatatatttataaatatgaagaGCAAAATCATTGATTGAAATCTTCTGCCACGATAGCGGATGTTTTTGTAAGAAGAATTCGAGTTTTTCCAATTTGAGGTCGGTGCTCTCAGAAACATACTTCAAAAGAAAGTCTGTCGTTTATCTTGTGATGTTTCTCAGCTCTTACTTTGCTTctttgtttgagtttttttttcatctgtgcGCTTTAGAATTGGATTTGAATGGCATACCATTACATGAGGTCTTATTACAGTGATTAGGCACATAAAGAAATCTATATCCACCAGGAAATTACTTTAACTGAATGTTTGAAGTGAATGTAAAAGCGACAATTCTGCCTGAAGAGAACTTGACTTGGTGCGGTACCCTGGCTCTAGCCTGTCTGGGCCTTTTTAATGTGCAGTGTAATGGAGtgtaatatttgcatttcttccACAAGAGACAGCAAGGCTTGGGTACCATTAacacaaaactgtttaaataaaagcatgcgttctgaaatgtaattcagtAACTCCTTCTCGAGGATCCTGGGCTGAAAATTGAACAATACAAGATTACAAATGATGCCACCACTGACTCAATGTGGTTAGGGTGCTGCAGTGGGCAAGCTGGGATCTCATATGaggtggaataataataataataattatgagaGCTGTTTTGATGGAAGTAAAAGGATCCCTGAGGACACTGGGTCAGTCGCTGCTTGACTGTGTGTTCAGGCTGTGCGGATTTGCTGCTCAGTTACCAAGATGCCCcgggagggaaggaaggaggcACACTAGCACATTGACTGAAGGTATGGAGGGAGCTGGCATCCCCGGCTGTCAATTATGGGGATTAGACTCAGCGGAGGCAGGCTGGCTTTGAGATGCCACTCGCAGGTGGCAGTCTCggcatttgaaaatgtgagTTAACAGCAAAGTAACCTTCCTACACTGAAGCCCCTCTGACTGCTCATTGCAGAAGCACTTCTGGAGAGACGTCTGGTCTCCATCACCTTCTGGGTCAGCCAACATTTATGACTCTCGTCTCGTCTACATGCCCAGCACGctttctgatttttatttttattttttttggttgtgcAGTAGGTGAAATTTGAAAAGTTTTAATAATGGTTTAGTATTTAAACATGTTCTGATAAAGCTGAtccacattaataataatattcagggCCTTTCAGAAAGTGATAGAAAGTAAAATTGCTGTTATCGTATCATTTGGTTGAAGCACTAGGTGTCAGAAttatttccttttcctgtttAACTGGATGCAGCTCAATGCCAATGAGCGTTGAGAGAGTGACAACCTTTTAAAGGACTGAGAGGAGTGTTAATGGCTGCTCAACAATCGTGTGTTGTCACATAGGTACGCAAGATGTCAACTGCAGCACGCTGGGATGAACGGCTGGGTTTTCAGTTGAATGCAGATTtatactgcttttctttttttattgctttatggAGAACCCAGGTATGCAATCCAAGCAGaatttacaataaaatcaaactcCAGATTGCCCTACAAAGGACATTGagtacaaacaaacagaaaatgtagtCACTTATTATCCAAAATATTCTACAGTATgggaaaacatttatattcaaaccAAGCCAGTAGATCAATAGATACCTAAGTTAAGTCTAACTTGGACAAAAAATCCGCACAGAtagagatattatggaagaaatttATCGTGAAAATCGGATGGAGTGCTTTGGAAGAAACCGGACGCTGTTGAAAggatctacccacttgcctgaagagaaaagtatttgatccatGCATACTAGCAGTGCTCACTTacggctgtgaaacctggtcgtTTAATGCAAAGATGTTAGAGATTGCAGACGAcgcaaaggagcatggaaagatgtttACCTGGAATAACGTGAGGAGATCAAGCCAAAAAATGTGAcgtcattgaaagagtgaagatgCTGAAGGTAGAAGGGAAGCTATTAACAGAAGTGGGAACATCGTGGGGAGACTCATCCAGGAGTGGATCCATATAGGCCAATGGACATGCTGTGGCTACTGTGCAATAGGGGctatactgaattaaaatggattgattgatataGATTATGCATTTTTTACGACATGttggtgtgtttttctttgttttaggtGGTGGGGGGTAGTTATGTGTATTGTTGTCCGATTGCCATGCTTGAATCCAACTTACAAATGTTGGAAATGTTTACAGTCAGTGCAGGATGACAGTGTAGTCAAATGATGTCGGAAATGTGAATGTATTTCGCCTGTAGATTGATATGATATGTGATGTGgttttctcttctttccttGTGTATGTAGAGACGACAAAGTTTACATGTTTAAGGCGGTATCTCCAAATGTCAAGCGATCTGAAAAAAGTGTACATTTgccaaaaatgaaattaatactGTTGGAGGTGTTAGAAGTTGATAGAATGGTTCTACGtggatacttttttttttttttttttaatcacaaaaaaaaattaaggaatCGCTGTTGAATTTCAGTTGTATTTGAGATTCCACCATCCTGTTCATTCATCGGTCAAAGCTTATGTTCTTGCCCTTAAACTGGTCCAGCTGGTGTTTTTTACTCTGGTCGGCTCAGATCTCAGGGAAGCTTGTTCATGCAGTCGTGGGGAAGAAGAAACAGCCTCATCATATTCCCTCCCAGGGTGGGTGTGGCCCATTGTGCTTGAGACACACCCAAACCTTCACGGAGCTCTGAATCATTGTTCTTCAGCTGCTGTTTGAAAACTTGCAATTTCAGTGTCCGTAATTGGAAATTACTTTTGAGCTGACTCTGCATGTTTCTGACAGAGCGGATTCATTTGGCCTCAAACTGGTTTCATTGTCTGTCCTGTTATTGTTTCTTCCctcataatttatttcacccaaagaaatgtataatcatggcatgacatgtttattttaataaattcagAGACTGATATTGTGTGAAAGTGTttttctacagaaaacaaaccctGCTTCTGTTAAACTTTataaaaagtcaattttaatCTTTGATTGTTTGAGGAATCAGTTGGTTCTTGTCATTTATCTCTGCATTGGCCTATGTAGAAGGGTGTTGTCTGTATTTGCCTCATTTGCTTCACCAATCAGAGATTTGTCTTGAACTAATTAACTCTTtaaggtgtgtttgtttttaactctgTTCCGT

Function

symbol description
capn7 Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human CAPN7 (calpain 7).

NR:

description
PREDICTED: calpain-7

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function

KEGG:

id description
K08576 CAPN7; calpain-7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002510 True 6944 mRNA 0.44 22 17137176 17158023

Neighbor

gene id symbol gene type direction distance location
AMCG00002509 eaf1 coding downstream 40093 17092906 ~ 17097083 (-)
AMCG00002508 mturn,LOC107572558,LOC107559763 coding downstream 46862 17080504 ~ 17090314 (-)
AMCG00002504 NA coding downstream 65251 17063407 ~ 17071925 (-)
AMCG00002505 NA coding downstream 84370 17021419 ~ 17052806 (-)
AMCG00002492 tmem158,LOC102794155 coding downstream 289060 16847424 ~ 16848116 (-)
AMCG00002514 NA coding upstream 25378 17183401 ~ 17185908 (-)
AMCG00002516 NA coding upstream 149243 17307266 ~ 17308556 (-)
AMCG00002515 pik3r4,LOC107556101,LOC107588487 coding upstream 196627 17354650 ~ 17371962 (-)
AMCG00002518 NA coding upstream 258114 17416137 ~ 17423894 (-)
AMCG00002519 mrpl3,LOC107748644,LOC107688359,LOC107710340 coding upstream 360982 17519005 ~ 17530234 (-)
G123646 NA non-coding downstream 61627 17075312 ~ 17075549 (-)
G123642 NA non-coding downstream 87120 16995129 ~ 17050056 (-)
G123637 NA non-coding downstream 154530 16980831 ~ 16982646 (-)
G123527 NA non-coding downstream 482313 16653499 ~ 16654863 (-)
G123524 stt3b,LOC108412618 non-coding downstream 485722 16648407 ~ 16651454 (-)
G123705 NA non-coding upstream 76347 17234370 ~ 17238544 (-)
G123788 NA non-coding upstream 502044 17660067 ~ 17675110 (-)
G123824 ctnnb1 non-coding upstream 653495 17811518 ~ 17815466 (-)
G123845 NA non-coding upstream 893074 18051097 ~ 18052332 (-)
G123876 NA non-coding upstream 1047645 18205668 ~ 18206132 (-)
AMCG00002503 NA other downstream 162875 16958162 ~ 16974301 (-)
G123585 NA other downstream 297454 16836156 ~ 16839722 (-)
G123263 NA other downstream 2190865 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 3482929 13649227 ~ 13654247 (-)
G122862 NA other downstream 4107770 13028197 ~ 13029406 (-)
AMCG00002524 NA other upstream 531985 17690008 ~ 17706289 (-)
G123829 NA other upstream 764429 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 775441 17933464 ~ 18041573 (-)
AMCG00002584 NA other upstream 4489032 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 4743269 21901292 ~ 21902597 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010880 capn7 coding NC_007127.7 CM002900.2 36167907 ~ 36196700 (-)
grasscarp (Ctenopharyngodon idella) CI01000016_02662862_02676190 CAPN7, CAN7 coding CI01000016 null 2661658 ~ 2676298 (+)