AMCG00002538


Basic Information

Item Value
gene id AMCG00002538
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18226968 ~ 18241221 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002538
ATAGGAAACGCTGCATCTTCTGTCACTAAGCCAAAGCATCAGGCCAAGATACCATCCTCGGGAGAGTTGCATGACAAAAGACTGATCAAAAGCCCCTGTTGTAGGACTTGCAGTGTACCAAAATATGTGACTCCTAGGATTAATACACCAGGGAGAGGGCCTTCTCTGAAAATCAAAGCTGAATCGAAAGGCTTGAAGATTAAGCAGAAGTCAGTTGTGACCCCTCAAGAAGAAATCAAGAAATCATCACAGAGCAAAGCCTTTGGGATAGAAAAATATCCCATCCTAAAGCTGTGTGATATAGTCAAAGGGTCTAACATCCCTATTGATGTCACTAGTTATAAGTGTGTTTTGCCcgttgaactgaaaacaaaaaacattaagtgTTTCAAAATAGAAGGCAGGGATTTAATATGCTTAAAAACTGAGGCTCAATCTACCCCATGCTCTGTGTATAGCAATGCCCTGAAAAAAAACTCCCTTGTCCCACGTACAAGAACACAGGAAATACCAGAAATGGTAAATGGGGTTCTTTCAGAAAGTCGCTTTAAAACCTATGACATACCGACCCAGAGTGATACTGGAGTTGCTGTCtgtgagaaacaaaatgtaaaaaaaacaaatttgtccTGTGGAAGAACCATAAAGCCAATTGGTCCTCTTGGTATAAATGATGAAAAAGATTTAGAGAAATCAAGTGGCACATTAGAGACTGCAACCCCTGCACCTGTACTGACAGCCTTTAAGATAGAAACCTTGTCTCTTCTTCGTGAGATACAAGTGAAAGATGCTTTGTCGAATTTAGCAGAGAATTTGCAGAGCTGCGTCACAGATGATGGAGTCAAAAGCAAAGGAGACCTAGAAATGAGCATTTTGGGGAATCTTCATGCTGCGCAGAACACTGCTTCAACTGAGAATTGTACAGTTGACACCAAGCCTGCAGACACGGGAGGTGCCTTTAACAGACAGCAATCATATAGTTGCCAGAGAACTACACCATATGTAATACACACTTCCATTTCGTGTGCACGTGCCTATCTTCCGTGGCCCTTTGTTAAATGTGAGTCTTCTGAAGTAGATTGCCATTTGACATGCACACAGGTGTTGCCTTCTGAAGACAGTGAGTTATCAggtaagaaaactgaaaatctcAATTTGTCAGTCAGCTCACCAATACTAAATGGATCCAGTGAAACTGAAAATTCCTTGCATCCTAGTATAGAATGCAAAGAAGAAGTTTTCACAGAAGATTCAAGTTCTTCCAATGCATCCGATTCAGACATGCAACCCCAAACGACAGAGGAGAGTGTTGTGCAAGATTCAGGGTCTTTGTTGGTTACACCTGTAAAGCAAGAGGGCGTGCCCACGATTTGCAGCCTTGCAATAGTCAATAGTCCTGACAAAGTCAAAAAAGAGAGGATCCTACAGGGTTGTGGCCTTGGTGAAAAGGCACATTTATCAGCTTGCGAAGATGGCAAGAGCTTTTCGGAAACACAACCACACAGGATGTCTTTAAAGAGATGCAGTTCTGCAGAGCTGGAAGAAGGTGACACAAACACCTGTCCAGTGAAGCGCTCTCTTACTATTGAACCTGAGACTTCTGAACTGTGCACAGTGGAAACAAAATCTTTTAATCCTGTTTCACCCTGTCATCCGGAGAAACTGCCTAGTGCAAGCCAGCAGGTGAAAATACCAAGGACATCTTTGACTTTCACTGAATACCTTTCATCTTGTCAGGATGCATCTAGTGCTGATGTAAGTAGCTCCTCTTCTGAAGACGACGATGGCTTGGCAGCGTTTGCTGCTGACTTCACTGCTGAGATCATGTGTGAAATAGAGGATGGTTGCTCAAGTAGCAATCAAAGGGTTTTGCATCACGCGTCAAGCACCAGCGACGGAGAGGCATCTGGTGATGTCATGGATGTGGTCAAGGCATACGAACAGGATGCCATCGTTCTCGATGTGATCCAGGATGACCCCGATTTGTTTGGGAACCTTGGAGAAGTCACCGAGTCAGTAGGAAAACCCAGCTGCACCACGAAAAGGCTGAAGAAGTGTGGGCACAGTCCTGTAAAAACTTCAAGGACCGTGTCTAATTGTAAGATTTCATTAGATGGCAGCGTAAgGGCTTGGCAGAACACACatcaggagaagaaaacaaatgtcttctTAGAACAAGATTGCAAGACTGGTAGTAAACAGACTGAAGATTCCTCGCAACAAGGCAAGCCCTGGAGTATTACAAGGAGACTTGGTTTAtgCAGCAAACCTGTAGAGCGCATTGAACACCAACAGATGTACTGCAGGTTTTACTTCAGTCCCCTCCTTGTCTGTACCCGGCCAGCATGCCGCTTTTTGCATGTACCCATAAGTGGAGATGAAAAGTATTGCATGGAAGTTGTTCAGCAGTTCATGAAGATTTTGAATCCATCTTATTTGCAACGTGCAGCTGCAGTGTTTACAAATTACTACCAAAGCTCCCGACCTggaatttatttcaaatgtcaaatCCTGCATTCCCTTCTGTCAACACTGTTGAAGAGAGGTCATTTGAGAGATTTATTTGCTGTGCTTCGAATCACAGCAATGTACAAAACTTTGtgtGTAGAAGCAGGCCTAGAATTCACTGTGGAAAACTTTGACTATATGCAACATCAGCTGAATCGTCTTCAAGTATCAAAACAGGAGCTAGAACTCTTTCTGGCTATGAAATCAAGAACAGTAAGGAGAGAAGCATGGAAAACAGGACAGTTTGATCTAGACACGGCAGTTGCTGAAATAGAGCATTATAAAGAGCAGGAAGACTGGGCAAAGATTGGAGCAATGTTCAACAGTATGTGTCTCTCCAATGGCAGTCTTGACAGTCTAAACCGGTTCTGCGCTTGCATTGCATCCGTGCTTCTGAAAGACATCCACAGCACCCCGTCGGTTCCTTTCTGTAAATTTATAGAAACGGtttcccAAGAAAACCATATAAATGGGTTGGATAAAAGTTTACTTGGAAGGATTGGAATTTCGGTGATGTTTGGATActacaaaacacagcagtggGCAAAGGGGCGTAAGTTATTGGATGCCTTGACTGGGATGAAGATCAACTTCTCTACACTTAAAGGACTCTTTGGGAATGAATGCCATGCCTCCAGATGCCAAATTGTGAATACTGCTACAGAAATCTTCCTCAAAAGTGGAAGTGTAGAGAAAGCAATGAACATATTGAAAGATACTGAGTGGATGATCAGCTCTCCAATGTGGCCTTGTGAGAGCATTGACGTTGTGAATCGCCATAATTTGCTGTGTAAAATCGCTGAACAAACATCTCAGAAGAACATGTATGTGGAAACTCTCGAAGTTCTGACGAAGCTGCCTGGGCTACACGATGTCCACTGCAGTTTTGATGTTACCAGATATGATGACATTTTCAACCGACATTTATGGTCCTGCTTTAAGTACCAGAATTTAAGAGTGTGTTGCAGTATTGTGGAGTTCATGGTTTCAAAGAATATCTCTGTGGATTTCTGCCTTCTCAGGAAGTTAATCCACAAACTTGGACAACAATGTCTTTGGCCCAAAGCCAGATCTCtctacaaatGTGCTCTCTCCCTGGGCTGTTACCCTCCTTTTCAAGGAAACATGTACTGCAGACTCCTTTCTGTCCCCTGTTCCCTGTCTGAGATTGAGATGACGCTGGCCTTAgaagtctttattttttcaaatgcgCATGACATTAAGAATCCAAGCACCTCCGCGCTTCAAATTGTACTGAAAAGGAATGAAGACCGTGCACTGATAAGTGAAACTGACTACCATGCAGCGGTGAACAGACTCCTGTCTGCTGCTCAGATTACCAGTCCGAAACTGGTGATTAAATACGCTACTGTAAACGTCTCCAAAGAACAGGTGTTCACACTGGACCATTTGTCCGCACTGAAGTGGCTGGATAAGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002538 True 3948 mRNA 0.43 15 18226968 18241221

Neighbor

gene id symbol gene type direction distance location
AMCG00002537 NA coding downstream 2118 18215795 ~ 18224850 (-)
AMCG00002539 trim71 coding downstream 22485 18203377 ~ 18204483 (-)
AMCG00002536 trim71,LOC107657583,LOC107551222,LOC107723073,LOC107601676,LOC107704101,LOC107751884 coding downstream 44341 18172131 ~ 18182627 (-)
AMCG00002532 NA coding downstream 164903 18058532 ~ 18062065 (-)
AMCG00002531 NA coding downstream 324158 17876005 ~ 17902810 (-)
AMCG00002542 NA coding upstream 78918 18320139 ~ 18335125 (-)
AMCG00002541 snrk,snrka,LOC107551216,LOC107723077,LOC107601674,LOC107657578 coding upstream 142599 18383820 ~ 18389641 (-)
AMCG00002543 snrk,LOC107101967 coding upstream 185503 18426724 ~ 18427338 (-)
AMCG00002544 NA coding upstream 241512 18482733 ~ 18492180 (-)
AMCG00002545 rpl14 coding upstream 263676 18504897 ~ 18508670 (-)
G123876 NA non-coding downstream 20836 18205668 ~ 18206132 (-)
G123845 NA non-coding downstream 174636 18051097 ~ 18052332 (-)
G123824 ctnnb1 non-coding downstream 411502 17811518 ~ 17815466 (-)
G123788 NA non-coding downstream 551858 17660067 ~ 17675110 (-)
G123705 NA non-coding downstream 988424 17234370 ~ 17238544 (-)
G123926 NA non-coding upstream 228013 18469234 ~ 18469607 (-)
G123961 NA non-coding upstream 343488 18584709 ~ 18585930 (-)
G123981 NA non-coding upstream 540924 18782145 ~ 18782366 (-)
G124068 NA non-coding upstream 1042657 19283878 ~ 19284293 (-)
G124175 NA non-coding upstream 2060851 20302072 ~ 20334454 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 185395 17933464 ~ 18041573 (-)
G123829 NA other downstream 237503 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 520679 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 1252667 16958162 ~ 16974301 (-)
G123585 NA other downstream 1387246 16836156 ~ 16839722 (-)
AMCG00002584 NA other upstream 3405834 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 3660071 21901292 ~ 21902597 (-)
G124719 NA other upstream 4844773 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 4940700 23181921 ~ 23192656 (-)
G124829 NA other upstream 6020344 24261565 ~ 24261823 (-)

Expression


Co-expression Network