Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00002539 |
| gene name | trim71 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030136.1 |
| NCBI id | CM030136.1 |
| chromosome length | 27394605 |
| location | 18203377 ~ 18204483 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| trim71 | Predicted to enable miRNA binding activity; translation repressor activity; and ubiquitin protein ligase activity. Acts upstream of or within embryonic body morphogenesis. Predicted to be located in P-body. Is expressed in several structures, including nervous system; neural tube; pectoral fin musculature; polster; and solid lens vesicle. Orthologous to human TRIM71 (tripartite motif containing 71). |
| description |
|---|
| PREDICTED: E3 ubiquitin-protein ligase TRIM71 |
| id | name | namespace |
|---|---|---|
| GO:0072089 | stem cell proliferation | biological_process |
| GO:2000177 | regulation of neural precursor cell proliferation | biological_process |
| GO:0035278 | miRNA mediated inhibition of translation | biological_process |
| GO:0000082 | G1/S transition of mitotic cell cycle | biological_process |
| GO:0010172 | embryonic body morphogenesis | biological_process |
| GO:0060964 | regulation of gene silencing by miRNA | biological_process |
| GO:0008543 | fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0021915 | neural tube development | biological_process |
| GO:0051865 | protein autoubiquitination | biological_process |
| GO:0010586 | miRNA metabolic process | biological_process |
| GO:0000932 | P-body | cellular_component |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0035198 | miRNA binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00002539 | True | 705 | mRNA | 0.59 | 2 | 18203377 | 18204483 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00002536 | trim71,LOC107657583,LOC107551222,LOC107723073,LOC107601676,LOC107704101,LOC107751884 | coding | downstream | 20750 | 18172131 ~ 18182627 (-) |
| AMCG00002532 | NA | coding | downstream | 141312 | 18058532 ~ 18062065 (-) |
| AMCG00002531 | NA | coding | downstream | 300567 | 17876005 ~ 17902810 (-) |
| AMCG00002530 | NA | coding | downstream | 346309 | 17838579 ~ 17857068 (-) |
| AMCG00002523 | NA | coding | downstream | 518080 | 17678022 ~ 17685297 (-) |
| AMCG00002537 | NA | coding | upstream | 11312 | 18215795 ~ 18224850 (-) |
| AMCG00002538 | NA | coding | upstream | 22485 | 18226968 ~ 18241221 (-) |
| AMCG00002542 | NA | coding | upstream | 115656 | 18320139 ~ 18335125 (-) |
| AMCG00002541 | snrk,snrka,LOC107551216,LOC107723077,LOC107601674,LOC107657578 | coding | upstream | 179337 | 18383820 ~ 18389641 (-) |
| AMCG00002543 | snrk,LOC107101967 | coding | upstream | 222241 | 18426724 ~ 18427338 (-) |
| G123845 | NA | non-coding | downstream | 151045 | 18051097 ~ 18052332 (-) |
| G123824 | ctnnb1 | non-coding | downstream | 387911 | 17811518 ~ 17815466 (-) |
| G123788 | NA | non-coding | downstream | 528267 | 17660067 ~ 17675110 (-) |
| G123705 | NA | non-coding | downstream | 964833 | 17234370 ~ 17238544 (-) |
| G123646 | NA | non-coding | downstream | 1127828 | 17075312 ~ 17075549 (-) |
| G123876 | NA | non-coding | upstream | 1185 | 18205668 ~ 18206132 (-) |
| G123926 | NA | non-coding | upstream | 264751 | 18469234 ~ 18469607 (-) |
| G123961 | NA | non-coding | upstream | 380226 | 18584709 ~ 18585930 (-) |
| G123981 | NA | non-coding | upstream | 577662 | 18782145 ~ 18782366 (-) |
| G124068 | NA | non-coding | upstream | 1079395 | 19283878 ~ 19284293 (-) |
| AMCG00002533 | ulk4,LOC107704090 | other | downstream | 161804 | 17933464 ~ 18041573 (-) |
| G123829 | NA | other | downstream | 213912 | 17922452 ~ 17989465 (-) |
| AMCG00002524 | NA | other | downstream | 497088 | 17690008 ~ 17706289 (-) |
| AMCG00002503 | NA | other | downstream | 1229076 | 16958162 ~ 16974301 (-) |
| G123585 | NA | other | downstream | 1363655 | 16836156 ~ 16839722 (-) |
| AMCG00002584 | NA | other | upstream | 3442572 | 21647055 ~ 21678545 (-) |
| AMCG00002596 | NA | other | upstream | 3696809 | 21901292 ~ 21902597 (-) |
| G124719 | NA | other | upstream | 4881511 | 23085994 ~ 23296115 (-) |
| AMCG00002629 | sqle,LOC106579093,LOC102798444,LOC106605546 | other | upstream | 4977438 | 23181921 ~ 23192656 (-) |
| G124829 | NA | other | upstream | 6057082 | 24261565 ~ 24261823 (-) |
