AMCG00002541 (snrk,snrka,LOC107551216,LOC107723077,LOC107601674,LOC107657578)


Basic Information

Item Value
gene id AMCG00002541
gene name snrk,snrka,LOC107551216,LOC107723077,LOC107601674,LOC107657578
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18383820 ~ 18389641 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002541
ATGTCCAGTACTCCTGTTAGGCGGTTCACATCCATGCTATTGCAGGAGTCGAGCCCAGGTAAATTCTGGAGTGTGACGCTGTTCTTCTCCCCCGTCTTCAGTCTGATCAACCGGATGCTGCAGCGAGACCCCAAGCGGAGAGCCTCCCTGGACGAGATTGAGAACCACGCCTGGTTGCAGGGGGTGGACCCATCGCCCGCCACCAAGTACAACATCCCCTTGGTGTCCCACAAGAACCTCTCGGAGGAGGAGCACAACAGCATCATCCAGCGCATGGTCCTGGGAGACATTGCAGACCGGGAAACCATTATCGAGGCTTTGGAAACGAACAAGTACAATCACATCACTGCCACCTACTTCCTACTGGCCGAGAGGATCCTGAGAGAGAAGCAGGAGAAGGAGATCCAGAACCGCTCCTCCAGCCCCAGCAATATCAAAGCCCAGTTCAGGCAGTCGTGGCCTACGAAGATCGACATGCACCAGGACATTGAGGACAGTCTGGCAGCTTCCTCCATCTCCCACGCCGGGGGCCCCCAGTCTCCGGCTCGTAGTGCGGAGAACCTGCTCAATGGGCATCGGAGCAAAGGGCTGCTGGAGCTGGGGCGGCGGGAGGATCTCACGGACTCGTCTCTTCTGTCCCTGGCCCCCCCGAGCTGCTCGTCCCTGCTGCCTCCTTCTCTCACCGCCACCAGCTCCCTGAAACCGGGCGCGGCCGCTGCGGCTGCCAGCAAGAACCGCACGTGTCTGTTCAGGgtggaggaggacgaggaggaggaggaggaagagccgCGGCCGTCACTGCTGCCCACCCAGGTGGTGCTGCGGCGCAAGCCCTCCATCACCAACCGGCTGACATCTCGCAAGAGCGCCCCGGTGCTCAACCAGATCTTCGAGGAGGAGGGCGAGTCGGACGACGACTTCGACATGGATGAGAGCCTCCCGCCCAAGCTGAGCCGGCTGAAGATGAACATCGCCTCGCCGGGCACCGTGCACAAACGCTACCACCGCCGGAAAAGCCAGGGCCGGGGCTCCAGCTGCAGCAGCTCGGAGACCAGCGATGACGACTCGGAGAGCCACCGCCGTCGGTTGGACAAGGAGACGGGGTTCGCCTACTCATGGAACCGCAGGGACAGCAGTGAGGGGCCGCCGGGCAACCCGGGCGGGAACGGAGGCGGGAGTGGAGGAGGTGGGCAGAGCAAGCCTCCGGGAGAGGGCAACCCTGGTCCGGACAGAGGAAGTCCGCCTGGAGGAGGTGGGGGCGGAGGTGGAGGGGGTGGTGgcggaggtgggggtgggggagggggtggaggaaATAAAGGAGAAGGCAGTCCTTCCAGCAGCTCTAACGGCAGCACCAATAACACTTCAGGCTCCACCCGAAGCTGCTCACACTCGTCCCCCTCAGCCAAGACTGCGGGAGAGCTGGTGGAGAGCCTGAAGCTCATGGGCCTCTGCTTGAGCTCCCAGTTCCACCTGGGCGTGGGCGGCGTGGGGAACGGCGGGGGCGTGGGCAAGTACATCATCGACCCCCAGAACAACCTGACCTTCTCCAGCGTCAAAGTCCAGGAGAAGTCCTCGTGGAAGATGTGCATCGGCTCCAACGGCAGCCTGGACAAGGCCCCGCTGCCCCTTAGCACGGCCCTCAGCTCCGGCCTGGGCCTCCCCAAGGCCTTCCCCGACCCGACGGCAGCCACCCTCAACGAGCTGGACTTGGCCAAGGAGAACAACATGAACCTGAAAAACAATGTTCTGCAGCTACCTCTGTGTGAAAAGACCATCTCTGTGAACATCCAGCGCAACGCCAAGGAAGGGCTGCTCTGCACCTCCAGTCAGACCAGCTGCTGTCAAGTCATATGA

Function

symbol description
snrka Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and protein phosphorylation. Predicted to act upstream of or within phosphorylation. Orthologous to human SNRK (SNF related kinase).
snrk Enables ATP binding activity; magnesium ion binding activity; and protein serine/threonine kinase activity. Involved in protein phosphorylation. Predicted to be located in nucleus.

NR:

description
PREDICTED: SNF-related serine/threonine-protein kinase-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002541 True 1857 mRNA 0.63 4 18383820 18389641

Neighbor

gene id symbol gene type direction distance location
AMCG00002542 NA coding downstream 48695 18320139 ~ 18335125 (-)
AMCG00002538 NA coding downstream 142599 18226968 ~ 18241221 (-)
AMCG00002537 NA coding downstream 158970 18215795 ~ 18224850 (-)
AMCG00002539 trim71 coding downstream 179337 18203377 ~ 18204483 (-)
AMCG00002536 trim71,LOC107657583,LOC107551222,LOC107723073,LOC107601676,LOC107704101,LOC107751884 coding downstream 201193 18172131 ~ 18182627 (-)
AMCG00002543 snrk,LOC107101967 coding upstream 37083 18426724 ~ 18427338 (-)
AMCG00002544 NA coding upstream 93092 18482733 ~ 18492180 (-)
AMCG00002545 rpl14 coding upstream 115256 18504897 ~ 18508670 (-)
AMCG00002549 NA coding upstream 139012 18528653 ~ 18545075 (-)
AMCG00002550 NA coding upstream 165157 18554798 ~ 18572982 (-)
G123876 NA non-coding downstream 177688 18205668 ~ 18206132 (-)
G123845 NA non-coding downstream 331488 18051097 ~ 18052332 (-)
G123824 ctnnb1 non-coding downstream 568354 17811518 ~ 17815466 (-)
G123788 NA non-coding downstream 708710 17660067 ~ 17675110 (-)
G123705 NA non-coding downstream 1145276 17234370 ~ 17238544 (-)
G123926 NA non-coding upstream 79593 18469234 ~ 18469607 (-)
G123961 NA non-coding upstream 195068 18584709 ~ 18585930 (-)
G123981 NA non-coding upstream 392504 18782145 ~ 18782366 (-)
G124068 NA non-coding upstream 894237 19283878 ~ 19284293 (-)
G124175 NA non-coding upstream 1912431 20302072 ~ 20334454 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 342247 17933464 ~ 18041573 (-)
G123829 NA other downstream 394355 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 677531 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 1409519 16958162 ~ 16974301 (-)
G123585 NA other downstream 1544098 16836156 ~ 16839722 (-)
AMCG00002584 NA other upstream 3257414 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 3511651 21901292 ~ 21902597 (-)
G124719 NA other upstream 4696353 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 4792280 23181921 ~ 23192656 (-)
G124829 NA other upstream 5871924 24261565 ~ 24261823 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010443 snrka coding NC_007127.7 CM002900.2 8047896 ~ 8132742 (-)
grasscarp (Ctenopharyngodon idella) CI01000016_10799559_10842613 SNRK, SNRKA coding CI01000016 null 10799185 ~ 10843409 (-)